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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtctgctaacttcaagatcctgctctttcatttctgcagcttatttacacatgtttttgaattgagattaaaccagtaaaggaaccaatgtaattagaggctatatttaacttgtatccatttaatttacatatttgaagcgtacatttgccaatgttctgaaaccgaaactttctttgctctttcagCACATGAACCAAAGAAGCTTGCCTGGTGGCAGCGTTTTATTCCAGGGATGATGAAACGTTTCTACAGGAAGCCTGTGGATAAATCAG

Basic information

species Physcomitrella patens
transcript PP1S92_53V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162157910|gb|FC334896.1|FC334896
EST:     AGATGATGAATATTCTTCTCCCAGCGAGGAGCAACAAGTGCCTGAAACTT                         CACATGAACCAGAGAAGCTTGCCTGGTGGCAGCGTTTTATTCCAGGGATGA
genomic: AGATGATGAATATTCTTCTCCCAGCGAGGAGCAACAAGTGCCTGAAACTTgtagtctgct ... gctctttcagCACATGAACCAAAGAAGCTTGCCTGGTGGCAGCGTTTTATTCCAGGGATGA
EST: gi|162196285|gb|FC375394.1|FC375394
EST:     AGATGATGAATATTCTTCTCCCAGCGAGGAGCAACAAGTGCCTGAAACTT                         CACATGAACCAGAGAAGCTTGCCTGGTGGCAGCGTTTTATTCCAGGGATGA
genomic: AGATGATGAATATTCTTCTCCCAGCGAGGAGCAACAAGTGCCTGAAACTTgtagtctgct ... gctctttcagCACATGAACCAAAGAAGCTTGCCTGGTGGCAGCGTTTTATTCCAGGGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaagcgtacatttgccaatgttctgaaaccgaaactttctttgctctttcagCACATGAACCAAAGAAGCTTGCCTGGTGGCAGCGTTTTATTCCAGGGATGATGAAACGTTTCTACAGGAAGCCTGTGGATAAATCAG
                                     ctttctttgctctttc  CT-rich tract
         tacattt  TA-rich tract