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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTGGGATGGTTTCAAGGATAATTATACTGTCATGATGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGTgtaaccttcttttcctatttaaaccaaatacgtgatgagtcgttttcagatgtttctgtaaagaaactcttctggtcgcttttagcttgcttctacaact...

Basic information

species Physcomitrella patens
transcript PP1S92_53V6.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19784441|gb|BQ040174.1|BQ040174
EST:     TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGT                         GTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
genomic: TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGTgtaaccttct ... ttgtacacagGTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
EST: gi|162257238|gb|FC433114.1|FC433114
EST:     TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGT                         GTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
genomic: TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGTgtaaccttct ... ttgtacacagGTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
EST: gi|7286927|gb|AW599414.1|AW599414
EST:     CCAGATCGAAGCTTACGT                         GTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
genomic: CCAGATCGAAGCTTACGTgtaaccttct ... ttgtacacagGTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
EST: gi|37829259|gb|BJ587271.1|BJ587271
EST:     TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGT                         GTCAAATTGCTT-GTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
genomic: TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGTgtaaccttct ... ttgtacacagGTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
EST: gi|37834108|gb|BJ592120.1|BJ592120
EST:     TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGT                         GTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
genomic: TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGTgtaaccttct ... ttgtacacagGTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
EST: gi|162157909|gb|FC334895.1|FC334895
EST:     TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGT                         GTGAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
genomic: TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGTgtaaccttct ... ttgtacacagGTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
EST: gi|162160589|gb|FC336358.1|FC336358
EST:     TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGT                         GTGAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT
genomic: TGTTTTCAAGTGGCGACCGTTGTTGGAATGGGCCAGATCGAAGCTTACGTgtaaccttct ... ttgtacacagGTCAAATTGCTTTGTGGAGTGAGAACTGAATTGAGGAATGTTGATGAACCT