1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GAGCAAGGTGATTTGAAACTGAGAGTGCGTGTTTTGGAGTCTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAGgtgatttatctggaccggattttgattatgtctagaaataaatcgaacattttaacttgtcattttcatacttttctgaacttaaacatttaggtcaact...
species | Physcomitrella patens |
transcript | PP1S83_45V6.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAG GCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGCEST: gi|162203519|gb|FC380435.1|FC380435
genomic: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAGgtgatttatc ... atgtgtgcagGCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGC
EST: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAG GCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGCEST: gi|162154519|gb|FC330521.1|FC330521
genomic: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAGgtgatttatc ... atgtgtgcagGCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGC
EST: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAG GCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGCEST: gi|162150063|gb|FC326594.1|FC326594
genomic: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAGgtgatttatc ... atgtgtgcagGCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGC
EST: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAG GCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGCEST: gi|162203518|gb|FC380434.1|FC380434
genomic: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAGgtgatttatc ... atgtgtgcagGCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGC
EST: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAG GCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGCEST: gi|162150064|gb|FC326595.1|FC326595
genomic: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAGgtgatttatc ... atgtgtgcagGCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGC
EST: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAG GCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCAEST: gi|162252540|gb|FC427856.1|FC427856
genomic: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAGgtgatttatc ... atgtgtgcagGCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCA
EST: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAG GCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGC
genomic: CTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAGgtgatttatc ... atgtgtgcagGCTATTCTTGCAGCTACTTGTCTACAAATCGCCACTATGTTGCACCTAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAAGGTGATTTGAAACTGAGAGTGCGTGTTTTGGAGTCTGAAAGAGCATTCAAACGTGTTGCTACGATGCAGCAGACAATTGGCCAGgtgatttatctggaccggattttgattatgtctagaaataaatcgaacattttaacttgtcattttcatacttttctgaacttaaacatttaggtcaact
- - - - - - - - - - - - - - - - - - - - - - AGAGCA
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