1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaagtaaatcgtcttgtattttttattataggcatcttctggtttttaaattttctgcagccctcgctccgaaaccatcgactgtttcttttgtcacgtatgactttagaaattttatttactctcgaaatttttataagaatttgataataagtccgatgattatgtgatctgcagATATGCATTGGAACTTCTTAGGTTCCGAGAGGCTGGGGTGGAAGTTGTAGTTAAG
species | Physcomitrella patens |
transcript | PP1S83_45V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAATCGCCAAACC ATATGCATTGGAACTTCTTAGGTTCCGAGAGGCTGGGGTGGAAGTTGTAGTEST: gi|100440626|gb|BY962313.1|BY962313
genomic: ATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAATCGCCAAACCgtaagtaaat ... tgatctgcagATATGCATTGGAACTTCTTAGGTTCCGAGAGGCTGGGGTGGAAGTTGTAGT
EST: TTTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAATCGCCCAACC ATATGCATTGGGACTTCTTAGGGTCCGAGAGGGCTGGGGTGGAAGTTGTAGEST: gi|162203519|gb|FC380435.1|FC380435
genomic: TT-GGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAATCGCCAAACCgtaagtaaat ... tgatctgcagATATGCATTGGAACTTCTTAGGTTCCGAGAGG-CTGGGGTGGAAGTTGTAG
EST: ATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAATCGCCAAACC ATATGCATTGGAACTTCTTAAGTTCCGAGAGGCTGGGGTGGAAGTTGTAGTEST: gi|162150064|gb|FC326595.1|FC326595
genomic: ATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAATCGCCAAACCgtaagtaaat ... tgatctgcagATATGCATTGGAACTTCTTAGGTTCCGAGAGGCTGGGGTGGAAGTTGTAGT
EST: ATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAATCGCCAAACC ATATGCATTGGAACTTCTTAGGTTCCGAGAGGCTGGGGTGGAAGTTGTAGT
genomic: ATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAATCGCCAAACCgtaagtaaat ... tgatctgcagATATGCATTGGAACTTCTTAGGTTCCGAGAGGCTGGGGTGGAAGTTGTAGT
tctcgaaatttttataagaatttgataataagtccgatgattatgtgatctgcagATATGCATTGGAACTTCTTAGGTTCCGAGAGGCTGGGGTGGAAGTTGTAGTTAAG
atttgat putative branch site (score: 6)
aaatttttataagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaatcgtcttgtattttttattataggcatcttctggtttttaaattttctgcagccctcgctccgaaaccatcgactgtttcttttgtcacgtatgactttagaaattttatttactctcgaaatttttataagaatttgataataagtccgatgattatgtgatctgcagATATGCATTGGAACTTCTTAGGTTCCGAGAGGCTGGGGTGGAAGTTGTAGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG