1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtctgtgatccagtcatgcaatcaaggctgacattcatggctgtatcttgttgttatggatttcatgcagtattacccccttgctttggtctgactatgtttatttcttgttggatcacagTATTGGATGGAATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAATCGCCAAACC
species | Physcomitrella patens |
transcript | PP1S83_45V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACCTTTTCGGTTTCCGGCTACCTTCACTTTTGTAGTGCGGGCCTTTTCAG TATTGGATGGAATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAAEST: gi|100440626|gb|BY962313.1|BY962313
genomic: ACCTTTTCGGTTTCCGGCTACCTTCACTTTTGTAGTGCGGGCCTTTTCAGgtctgtgatc ... tggatcacagTATTGGATGGAATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAA
EST: ACCTTTTCGGTTTCCGGCTACCTTCACTTTTGTAGTGCGGGCCTTTTCAG TATTGGATGGAATTTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAEST: gi|162203519|gb|FC380435.1|FC380435
genomic: ACCTTTTCGGTTTCCGGCTACCTTCACTTTTGTAGTGCGGGCCTTTTCAGgtctgtgatc ... tggatcacagTATTGGATGGAATT-GGGAAAGGATTAGACCCTCGATTTGATATTTCAGAA
EST: GTTTCCGGCTACCTTCACTTTTGTAGTGCGGGCCTTTTCAG TATTGGATGGAATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAAEST: gi|162150064|gb|FC326595.1|FC326595
genomic: GTTTCCGGCTACCTTCACTTTTGTAGTGCGGGCCTTTTCAGgtctgtgatc ... tggatcacagTATTGGATGGAATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAA
EST: ACCTTTTCGGTTTCCGGCTACCTTCACTTTTGTAGTGCGGGCCTTTTCAG TATTGGATGGAATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAA
genomic: ACCTTTTCGGTTTCCGGCTACCTTCACTTTTGTAGTGCGGGCCTTTTCAGgtctgtgatc ... tggatcacagTATTGGATGGAATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAA
gcagtattacccccttgctttggtctgactatgtttatttcttgttggatcacagTATTGGATGGAATTGGGAAAGGATTAGACCCTCGATTTGATATTTCAGAAATCGCCAAACC
gtctgac putative branch site (score: 22)
tttcttgtt putative PPT
tatgtttatttctt TA-rich tract