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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAGgtttgtgtacgattcactcttcctagtcggtatgctgcctgcggaagtaacctttttattgatatattctcacttcgactgaaattttaggcaaatttgtgttgtttttgttcaagggttcatgtctaagaaggttctacatccaacttctgatctctggcag

Basic information

species Physcomitrella patens
transcript PP1S6_209V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37824826|gb|BJ582892.1|BJ582892
EST:     TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAG                         GTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
genomic: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAGgtttgtgtac ... tctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
EST: gi|67699708|gb|BJ959941.1|BJ959941
EST:     TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAG                         GTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
genomic: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAGgtttgtgtac ... tctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
EST: gi|162181986|gb|FC356857.1|FC356857
EST:     TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAG                         GTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
genomic: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAGgtttgtgtac ... tctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
EST: gi|67693687|gb|BJ953920.1|BJ953920
EST:     TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAG                         GTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
genomic: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAGgtttgtgtac ... tctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA