1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTAACGAGGGACTGGGAGCGGCAGAGGACGACACATCGTTCCAAGCGTGGGTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAGgtattcgagtcccagttgacattgtccaagtgttttcggaggtctttgtgaagatccgggctgtgcgattccataaaaacgcattgcctgttgctgattt...
species | Physcomitrella patens |
transcript | PP1S6_209V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAG GAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCGEST: gi|67699708|gb|BJ959941.1|BJ959941
genomic: GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAGgtattcgagt ... gtatttgcagGAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
EST: CACGGTACATTGCTGCATGAAGAAG GAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCGEST: gi|162181986|gb|FC356857.1|FC356857
genomic: CACGGTACATTGCTGCATGAAGAAGgtattcgagt ... gtatttgcagGAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
EST: GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAG GAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCGEST: gi|67693687|gb|BJ953920.1|BJ953920
genomic: GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAGgtattcgagt ... gtatttgcagGAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
EST: GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAG GAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
genomic: GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAGgtattcgagt ... gtatttgcagGAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAACGAGGGACTGGGAGCGGCAGAGGACGACACATCGTTCCAAGCGTGGGTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAGgtattcgagtcccagttgacattgtccaagtgttttcggaggtctttgtgaagatccgggctgtgcgattccataaaaacgcattgcctgttgctgattt
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cataaaaa