1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtgtacgattcactcttcctagtcggtatgctgcctgcggaagtaacctttttattgatatattctcacttcgactgaaattttaggcaaatttgtgttgtttttgttcaagggttcatgtctaagaaggttctacatccaacttctgatctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGAGTGGCACCAACATATTGGCACCAAAAGAACTCTTTATAGCGACTCCAAT
species | Physcomitrella patens |
transcript | PP1S6_209V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAG GTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGAEST: gi|67699708|gb|BJ959941.1|BJ959941
genomic: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAGgtttgtgtac ... tctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
EST: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAG GTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGAEST: gi|162181986|gb|FC356857.1|FC356857
genomic: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAGgtttgtgtac ... tctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
EST: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAG GTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGAEST: gi|67693687|gb|BJ953920.1|BJ953920
genomic: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAGgtttgtgtac ... tctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
EST: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAG GTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
genomic: TGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAGgtttgtgtac ... tctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGA
tgttcaagggttcatgtctaagaaggttctacatccaacttctgatctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGAGTGGCACCAACATATTGGCACCAAAAGAACTCTTTATAGCGACTCCAAT
ttctgat putative branch site (score: 3)
tctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtacgattcactcttcctagtcggtatgctgcctgcggaagtaacctttttattgatatattctcacttcgactgaaattttaggcaaatttgtgttgtttttgttcaagggttcatgtctaagaaggttctacatccaacttctgatctctggcagGTTCATGACTAGCATCTATGGGTGGATGTCGAGGCTGCTTAGTCAACCAGAGTGGCACCAACATATTGGCACCAAAAGAACTCTTTATAGCGACTCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC