Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagactagttatgtgaatgttcctgatattgcaatcccaacttaccgatttgcagtcacacatcacatatgttcgatcatgtgttcatttgtatttgcagGAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAG

Basic information

species Physcomitrella patens
transcript PP1S6_209V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37824826|gb|BJ582892.1|BJ582892
EST:     GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAG                         GAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
genomic: GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAGgtattcgagt ... gtatttgcagGAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
EST: gi|67699708|gb|BJ959941.1|BJ959941
EST:     CACGGTACATTGCTGCATGAAGAAG                         GAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
genomic: CACGGTACATTGCTGCATGAAGAAGgtattcgagt ... gtatttgcagGAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
EST: gi|162181986|gb|FC356857.1|FC356857
EST:     GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAG                         GAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
genomic: GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAGgtattcgagt ... gtatttgcagGAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
EST: gi|67693687|gb|BJ953920.1|BJ953920
EST:     GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAG                         GAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG
genomic: GTGAAGATTTAGGGCACTCATATTACACGGTACATTGCTGCATGAAGAAGgtattcgagt ... gtatttgcagGAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatttgcagtcacacatcacatatgttcgatcatgtgttcatttgtatttgcagGAACGAGTGTTTTTCATTCTATACATGTGTGACCATCTTCGATATGCATCGTGCATGAGAATAGCATATGATCAG
                                         atttgtattt  TA-rich tract