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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGGCTTATATGGACTGTTCATTAGCAACGAATCAAATGACGGAAAAAGTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgagagccgttcacccagcttttcctcccttttcttttgtttcaaaaataaaggacacggtcatggaggttatgaagtggggcgtaacttcagtg...

Basic information

species Physcomitrella patens
transcript PP1S6_194V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162167439|gb|FC343142.1|FC343142
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162198165|gb|FC373089.1|FC373089
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162178816|gb|FC354748.1|FC354748
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162264350|gb|FC440516.1|FC440516
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162233471|gb|FC410242.1|FC410242
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162192965|gb|FC371948.1|FC371948
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|18332942|gb|BJ164955.1|BJ164955
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGNGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAA
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCG-GCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAA
EST: gi|162265400|gb|FC440726.1|FC440726
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162152959|gb|FC329261.1|FC329261
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|67698792|gb|BJ959025.1|BJ959025
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162211231|gb|FC386943.1|FC386943
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|37837789|gb|BJ595797.1|BJ595797
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162219204|gb|FC396643.1|FC396643
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162254307|gb|FC430442.1|FC430442
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|15327535|gb|BI488289.1|BI488289
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162187283|gb|FC363233.1|FC363233
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162162785|gb|FC337839.1|FC337839
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162168367|gb|FC344681.1|FC344681
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162189668|gb|FC366306.1|FC366306
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|208397953|gb|DC916708.1|DC916708
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162162784|gb|FC337838.1|FC337838
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162192964|gb|FC371947.1|FC371947
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162179437|gb|FC355437.1|FC355437
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|18340704|gb|BJ172734.1|BJ172734
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
EST: gi|162179436|gb|FC355436.1|FC355436
EST:     GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACG                         CGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG
genomic: GTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgaga ... tttcaaacagCGTCGGCCACTGTGGATGCGGATTACAACCCTTGACACATTAAAAACAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGGGCTTATATGGACTGTTCATTAGCAACGAATCAAATGACGGAAAAAGTGATCGTGCATTGAAGAATACTACCCTCTTCGGTATGTTTGCACTCACGgtaagcgagagccgttcacccagcttttcctcccttttcttttgtttcaaaaataaaggacacggtcatggaggttatgaagtggggcgtaacttcagtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA