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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggccaaatcatccctagagagacttgtgtaattgaggcgatctctaagaaccttcggtttacttctgatgcgatgcctaatctatattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG

Basic information

species Physcomitrella patens
transcript PP1S6_194V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162192965|gb|FC371948.1|FC371948
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|208375595|gb|DC902812.1|DC902812
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|100416319|gb|BY975332.1|BY975332
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162254308|gb|FC430443.1|FC430443
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162162785|gb|FC337839.1|FC337839
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctaagaaccttcggtttacttctgatgcgatgcctaatctatattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG
                                   gcctaat  putative branch site (score: 3)
                                      taatctatatt  TA-rich tract