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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatctaaacccttctctttcttaatgagcatgtctaccactagaattaattgaaatggactatcaggttatgaatcatcacttgtgcacattgaaaatctccagaccttgagagtttttatgtgaatattgagtttaaccatccattgtgtaacgtag

Basic information

species Physcomitrella patens
transcript PP1S6_194V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162264350|gb|FC440516.1|FC440516
EST:     CTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: CTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162192965|gb|FC371948.1|FC371948
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162265400|gb|FC440726.1|FC440726
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTNTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|208375595|gb|DC902812.1|DC902812
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162211231|gb|FC386943.1|FC386943
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|100416319|gb|BY975332.1|BY975332
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTT
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTT
EST: gi|162254308|gb|FC430443.1|FC430443
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162254307|gb|FC430442.1|FC430442
EST:     GCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: GCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162162785|gb|FC337839.1|FC337839
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162189668|gb|FC366306.1|FC366306
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTNTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|208397953|gb|DC916708.1|DC916708
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162179437|gb|FC355437.1|FC355437
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162179436|gb|FC355436.1|FC355436
EST:     GTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTNTGAGATGTGTTTG
genomic: GTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG