1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCACGAATTTGAGAGTATTTCTGATCTTCTATTGAAAGTTGCAAAGGCTCCTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaaatcatccctagagagacttgtgtaattgaggcgatctctaagaaccttcggtttacttctgatgcgatgcctaatctatattgtgcag
species | Physcomitrella patens |
transcript | PP1S6_194V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|208375595|gb|DC902812.1|DC902812
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|100416319|gb|BY975332.1|BY975332
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162254308|gb|FC430443.1|FC430443
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAEST: gi|162162785|gb|FC337839.1|FC337839
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACGAATTTGAGAGTATTTCTGATCTTCTATTGAAAGTTGCAAAGGCTCCTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaaatcatccctagagagacttgtgtaattgaggcgatctctaagaaccttcggtttacttctgatgcgatgcctaatctatattgtgcag
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