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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGACAAGTACTATCAAACGCCTCGCGTGTGGCTAACCGGTTATGATGAGgtacaattggttcattaacttttttatctattgttacagaaagtcctcataggtatcagtaaatatgcagtgcagtaacggttttctctctgcaagtgtg...

Basic information

species Physcomitrella patens
transcript PP1S62_116V6.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208393991|gb|DC928743.1|DC928743
EST:     ACGACCAGTACTATCAAACGCCTCGCGTGTGGCTAACCGGTTATGATGAG                         ACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC
genomic: ACGACAAGTACTATCAAACGCCTCGCGTGTGGCTAACCGGTTATGATGAGgtacaattgg ... cacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC
EST: gi|37825564|gb|BJ583630.1|BJ583630
EST:     ACGACAAGTACTATCAAACGCCTCGCGTGTGGCTAACCGGTTATGATGAG                         ACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC
genomic: ACGACAAGTACTATCAAACGCCTCGCGTGTGGCTAACCGGTTATGATGAGgtacaattgg ... cacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC
EST: gi|162165647|gb|FC341486.1|FC341486
EST:     AACCGGTTATGATGAG                         ACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC
genomic: AACCGGTTATGATGAGgtacaattgg ... cacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC
EST: gi|208396622|gb|DC920358.1|DC920358
EST:     GTTATGATGAG                         ACCCGTTATTTGCTTCAACCAGAACNTGTGTTGGAGGACGTTAGTCAAGAC
genomic: GTTATGATGAGgtacaattgg ... cacgtttcagACCCGTTATTTGCTTCAACCAGAACTTGTGTTGGAGGACGTTAGTCAAGAC