1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caggtttgtgatttgtctgcttggtgttcatgagcccagtggtttgcgtaagttctgtgttaatttatgtattgattagtttttggatggggttggctagAAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTTCTGTGAAGCGGAACTTCAAACCATTGATTCCTCAAGATGATGAAGATGA
species | Physcomitrella patens |
transcript | PP1S62_116V6.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAG AANACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTTEST: gi|162164443|gb|FC341569.1|FC341569
genomic: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAGgtatacagtg ... ggttggctagAAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTT
EST: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAG AAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTTEST: gi|208353788|gb|DC906476.1|DC906476
genomic: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAGgtatacagtg ... ggttggctagAAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTT
EST: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAG AAAACANGACAGAGGATGAAATTGTGCCATCTATGGAEST: gi|208384521|gb|DC914993.1|DC914993
genomic: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAGgtatacagtg ... ggttggctagAAAACAAGACAGAGGATGAAATTGTGCCATCTATGGA
EST: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAG AAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCA-GAAAAGTEST: gi|162165648|gb|FC341487.1|FC341487
genomic: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAGgtatacagtg ... ggttggctagAAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAA-GT
EST: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAG AAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTTEST: gi|208347066|gb|DC909350.1|DC909350
genomic: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAGgtatacagtg ... ggttggctagAAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTT
EST: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAG AAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTTEST: gi|100384884|gb|BY969619.1|BY969619
genomic: AGACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGAGgtatacagtg ... ggttggctagAAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTT
EST: ACNATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAGNNAG AAA-CA-GACAGAGGATGAAATTGTGCCATCTATGGACACTNCA-GAAAG
genomic: ACAATGATGATGATGAGGGTTGGCTTGCCACGCACGGAATTGACAG--AGgtatacagtg ... ggttggctagAAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACT-CAAGAAAG
gcgtaagttctgtgttaatttatgtattgattagtttttggatggggttggctagAAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTTCTGTGAAGCGGAACTTCAAACCATTGATTCCTCAAGATGATGAAGATGA
tattgat putative branch site (score: 3)
tgttaatttatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggtttgtgatttgtctgcttggtgttcatgagcccagtggtttgcgtaagttctgtgttaatttatgtattgattagtttttggatggggttggctagAAAACAAGACAGAGGATGAAATTGTGCCATCTATGGACACTCAAGAAAGTTCTGTGAAGCGGAACTTCAAACCATTGATTCCTCAAGATGATGAAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG