Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTGATTCTCGTAGGTGGCTGGATGAAAAGAATTGCAGTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTGgtaaggcttttgttgtgtttaggtttccatatggctttggaaggtgccgtttccatgtcatttttctttttacgttaagcgttgtgctccgttgacgtcc...

Basic information

species Physcomitrella patens
transcript PP1S62_116V6.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18326270|gb|BJ158269.1|BJ158269
EST:     GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG                         GTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
genomic: GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTGgtaaggcttt ... gagattgcagGTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
EST: gi|162174529|gb|FC350184.1|FC350184
EST:     GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG                         GTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
genomic: GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTGgtaaggcttt ... gagattgcagGTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
EST: gi|100406999|gb|BY973959.1|BY973959
EST:     GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG                         GTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
genomic: GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTGgtaaggcttt ... gagattgcagGTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
EST: gi|162164443|gb|FC341569.1|FC341569
EST:     GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG                         GTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
genomic: GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTGgtaaggcttt ... gagattgcagGTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
EST: gi|208353788|gb|DC906476.1|DC906476
EST:     GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG                         GTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
genomic: GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTGgtaaggcttt ... gagattgcagGTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
EST: gi|208384521|gb|DC914993.1|DC914993
EST:     GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG                         GTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
genomic: GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTGgtaaggcttt ... gagattgcagGTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
EST: gi|162165648|gb|FC341487.1|FC341487
EST:     GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG                         GTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
genomic: GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTGgtaaggcttt ... gagattgcagGTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
EST: gi|208347066|gb|DC909350.1|DC909350
EST:     GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG                         GTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
genomic: GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTGgtaaggcttt ... gagattgcagGTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
EST: gi|100384884|gb|BY969619.1|BY969619
EST:     GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTG                         GTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT
genomic: GTACGAATTTCAACACTTCTTCCACACAATCCTTATTTCTCTGAACAGTGgtaaggcttt ... gagattgcagGTCATAGTTCGGAGGGTAGGAGAGATTGCTTACTGCCATTGGTTGGTTCCT