1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTCGCACTGTCTCTGCCTTTAAGGAGAAGGGTGTACTCACTCCCGATGAATTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcctcttcatacgtttaaatttgatgtaaatctagtgtctctgtttcttcttgttacgatcgcagatttttctggaagtggagcaagggacagattaggaaatacgcctaattatacaatgacgtttgggatctaattactcggtgtcgtccctgtatttctag
species | Physcomitrella patens |
transcript | PP1S62_116V6.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTG GGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCAEST: gi|162174529|gb|FC350184.1|FC350184
genomic: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcc ... gtatttctagGGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCA
EST: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTG GGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCAEST: gi|100406999|gb|BY973959.1|BY973959
genomic: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcc ... gtatttctagGGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCA
EST: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTG GGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCAEST: gi|162164443|gb|FC341569.1|FC341569
genomic: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcc ... gtatttctagGGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCA
EST: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTG GGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCAEST: gi|208353788|gb|DC906476.1|DC906476
genomic: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcc ... gtatttctagGGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCA
EST: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTG GGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCAEST: gi|208384521|gb|DC914993.1|DC914993
genomic: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcc ... gtatttctagGGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCA
EST: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTG GGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCAEST: gi|162165648|gb|FC341487.1|FC341487
genomic: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcc ... gtatttctagGGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCA
EST: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTG GGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCAEST: gi|208347066|gb|DC909350.1|DC909350
genomic: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcc ... gtatttctagGGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCA
EST: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTG GGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCAEST: gi|100384884|gb|BY969619.1|BY969619
genomic: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcc ... gtatttctagGGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCA
EST: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTG GGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCA
genomic: TTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcc ... gtatttctagGGAAATGGGCGACCCGAACAAGCGGAAACCGTATCTTCCCGCCGAGAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGCACTGTCTCTGCCTTTAAGGAGAAGGGTGTACTCACTCCCGATGAATTCATTCTAGCAGGAGACAATCTTGTTTCCAAGTGTCCCACTTGGTCTTGgtaatcatcctcttcatacgtttaaatttgatgtaaatctagtgtctctgtttcttcttgttacgatcgcagatttttctggaagtggagcaagggacagattaggaaatacgcctaattatacaatgacgtttgggatctaattactcggtgtcgtccctgtatttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA