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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGACTTCGTGATCCTCAACCTTGACCTATGGACGATGGTGCCTCTTCTTGACCCgtaagtactaatctgttcctcttggaaattccgcttagttggttaattactatcagagaataccgtccatgaacaaactgatactcatgttcattctcgatgcag

Basic information

species Physcomitrella patens
transcript PP1S61_277V6.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67698086|gb|BJ958319.1|BJ958319
EST:     TTCGTGATCCTCAACCTTGACCTATGGACGATGGTGCCTCTTCTTGACCC                         AATTGCAAACATTGTCAACTGCATGCGCACAGAGAACGTTGAGTCAGTAAT
genomic: TTCGTGATCCTCAACCTTGACCTATGGACGATGGTGCCTCTTCTTGACCCgtaagtacta ... ctcgatgcagAATTGCAAACATTGTCAACTGCATGCGCACAGAGAACGTTGAGTCAGTAAT
EST: gi|208365600|gb|DC944098.1|DC944098
EST:     TTCGTGATCCTCAACCTTGACCTATGGACGATGGTGCCTCTTCTTGACCC                         AATTGCAAACATTGTCAACTGCATGCGCACAGAGAACGTTGAGTCAGTAAT
genomic: TTCGTGATCCTCAACCTTGACCTATGGACGATGGTGCCTCTTCTTGACCCgtaagtacta ... ctcgatgcagAATTGCAAACATTGTCAACTGCATGCGCACAGAGAACGTTGAGTCAGTAAT
EST: gi|162176344|gb|FC353529.1|FC353529
EST:     TTCGTGATCCTCAACCTTGACCTATGGACGATGGTGCCTCTTCTTGACCC                         AATTGCAAACATTGTCAACTGCATGCGCACAGAGAACGTTGAGTCAGTAAT
genomic: TTCGTGATCCTCAACCTTGACCTATGGACGATGGTGCCTCTTCTTGACCCgtaagtacta ... ctcgatgcagAATTGCAAACATTGTCAACTGCATGCGCACAGAGAACGTTGAGTCAGTAAT
EST: gi|67574672|gb|BJ947496.1|BJ947496
EST:     TTCGTGATCCTCAACCTTGACCTATGGACGATGGTGCCTCTTCTTGACCC                         AATTGCAAACATTGTCAACTGCATGCGCACAGAGAACGTTGAGTCAGTAAT
genomic: TTCGTGATCCTCAACCTTGACCTATGGACGATGGTGCCTCTTCTTGACCCgtaagtacta ... ctcgatgcagAATTGCAAACATTGTCAACTGCATGCGCACAGAGAACGTTGAGTCAGTAAT