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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagtatgaagttagttgcattagtgaatatcaacatgccttcaagcttagtttcatcttgagtctgttcttacgctgtgtttctttcaatgatgaatcagTTGATGAAATGTACCTCGCATCCTTAATTAACAAAGGGAGACAGGCGTATGAAAAAGGCATGACTGACCCTACAGCCCTGCCGGTTGAGACTATCTTGCA

Basic information

species Physcomitrella patens
transcript PP1S61_277V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67698086|gb|BJ958319.1|BJ958319
EST:     TGTCTCTCTTGGCACCGACGGCGCTCCTTCGAACAACCGCATGAGCTTAG                         TTGATGAAATGTACCTCGCATCNTTAATTAACAAAGGGAGACAGGCGTATG
genomic: TGTCTCTCTTGGCACCGACGGCGCTCCTTCGAACAACCGCATGAGCTTAGgtgaagagtt ... gatgaatcagTTGATGAAATGTACCTCGCATCCTTAATTAACAAAGGGAGACAGGCGTATG
EST: gi|208365600|gb|DC944098.1|DC944098
EST:     TGTCTCTCTTGGCACCGACGGCGCTCCTTCGAACAACCGCATGAGCTTAG                         TTGATGAAATGTACCTCGCATCCTTAATTAACAAAGGGAGACAGGCGTATG
genomic: TGTCTCTCTTGGCACCGACGGCGCTCCTTCGAACAACCGCATGAGCTTAGgtgaagagtt ... gatgaatcagTTGATGAAATGTACCTCGCATCCTTAATTAACAAAGGGAGACAGGCGTATG
EST: gi|162176344|gb|FC353529.1|FC353529
EST:     TGTCTCTCTTGGCACCGACGGCGCTCCTTCGAACAACCGCATGAGCTTAG                         TTGATGAAATGTACCTCGCATCCTTAATTAACAAAGGGAGACAGGCGTATG
genomic: TGTCTCTCTTGGCACCGACGGCGCTCCTTCGAACAACCGCATGAGCTTAGgtgaagagtt ... gatgaatcagTTGATGAAATGTACCTCGCATCCTTAATTAACAAAGGGAGACAGGCGTATG
EST: gi|67574672|gb|BJ947496.1|BJ947496
EST:     TGTCTCTCTTGGCACCGACGGCGCTCCTTCGAACAACCGCATGAGCTTAG                         TTGATGAAATGTACCTCGCATCCTTAATTAACAAAGGGAGACAGGCGTATG
genomic: TGTCTCTCTTGGCACCGACGGCGCTCCTTCGAACAACCGCATGAGCTTAGgtgaagagtt ... gatgaatcagTTGATGAAATGTACCTCGCATCCTTAATTAACAAAGGGAGACAGGCGTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttagtttcatcttgagtctgttcttacgctgtgtttctttcaatgatgaatcagTTGATGAAATGTACCTCGCATCCTTAATTAACAAAGGGAGACAGGCGTATGAAAAAGGCATGACTGACCCTACAGCCCTGCCGGTTGAGACTATCTTGCA
                     ttcttac  putative branch site (score: 2)
                                  tttcttt  TA-rich tract