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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggttgtactagcaactgaatttgagagcaaataggtggaatgcaggtgttgtggagagttattttgtatgtttcattcgttgttttgtgaatcaatcagGAATGACTAACACACATGTGCACACATCGCAACAACTAGCACGCGGCATAGCTGACGATGTGGATCTACTCACTTGGTTGCACGGCCGCATTTGGCCATA

Basic information

species Physcomitrella patens
transcript PP1S61_277V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100390432|gb|BY952840.1|BY952840
EST:     AAGCGAAGCAGATGCGATTGTTGACCTCTCCTCTAAATGGGTTCTGCCGG                         GAATGACTAACACACATGTGCACACATCGCAACAACTAGCACGCGGCATAG
genomic: AAGCGAAGCAGATGCGATTGTTGACCTCTCCTCTAAATGGGTTCTGCCGGgtatgtcttc ... aatcaatcagGAATGACTAACACACATGTGCACACATCGCAACAACTAGCACGCGGCATAG
EST: gi|18352729|gb|BJ184784.1|BJ184784
EST:     AAGCGAAGCAGATGCGATTGTTGACCTCTCCTCTAAATGGGTTCTGCCGG                         GAATGACTAACACACATGTGCACACATCGCAACAACTAGCACGCGGCATAG
genomic: AAGCGAAGCAGATGCGATTGTTGACCTCTCCTCTAAATGGGTTCTGCCGGgtatgtcttc ... aatcaatcagGAATGACTAACACACATGTGCACACATCGCAACAACTAGCACGCGGCATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgttgtggagagttattttgtatgtttcattcgttgttttgtgaatcaatcagGAATGACTAACACACATGTGCACACATCGCAACAACTAGCACGCGGCATAGCTGACGATGTGGATCTACTCACTTGGTTGCACGGCCGCATTTGGCCATA
              ttattttgtatgttt  TA-rich tract