Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTGGGCATCAGAGCTTGCTTGACTCGCTCAACCATGGATTGTGGGGAGGGATTGCCACCGACTTGGGCCTCTGAAACCACAGAGTCCTGCTTGCAGgtcaaacatagtaactcaaactcctaccgtcttctattcatatttttcttcatatcagcccttaccctgtgtgcggttgttttgtgaacctatag

Basic information

species Physcomitrella patens
transcript PP1S61_277V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100390432|gb|BY952840.1|BY952840
EST:     AGGGATTGCCACCGGCTTGGGCCTCTGAAACCACAGAGTCCCGCTTGCAG                         ACTCAGGAGGAGCTCTTC
genomic: AGGGATTGCCACCGACTTGGGCCTCTGAAACCACAGAGTCCTGCTTGCAGgtcaaacata ... gaacctatagACTCAGGAGGAGCTCTTC
EST: gi|161979274|gb|EE296324.1|EE296324
EST:     AGGGATTGCCACCGACTTGGGCCTCTGAAACCACAGAGTCCTGCTTGCAG                         ACTCAGGAGGAGCCCTTCGAGAAGTTCAATGGAAGCGCTGAAGGGAGGATT
genomic: AGGGATTGCCACCGACTTGGGCCTCTGAAACCACAGAGTCCTGCTTGCAGgtcaaacata ... gaacctatagACTCAGGAGGAGCTCTTCGAGAAGTTCAATGGAAGCGCTGAAGGGAGGATT