1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tcttacgggatattatttgatatgtaaatttttcattctaatcttgaaaataatctttgagtaagtagagcaatgtctcatcttgtgttcattgatgcagATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCAGTTGGTCGACGAGGATTGGCGGGTACATTATTTGTTCACAAG
species | Physcomitrella patens |
transcript | PP1S55_31V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTTTGGGTCTGCTGCTGAGCAAGCGAAGGCAGAAGGGTTCAAAGTTGAG ATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCAEST: gi|208364697|gb|DC943599.1|DC943599
genomic: ATTTTGGGTCTGCTGCTGAGCAAGCGAAGGCAGAAGGGTTCAAAGTTGAGgtatggatgc ... attgatgcagATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCA
EST: ATTTTGGGTCTGCTGCTGAGCAAGCGAAGGCAGAAGGGTTCAAAGTTGAG ATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCAEST: gi|162258293|gb|FC434692.1|FC434692
genomic: ATTTTGGGTCTGCTGCTGAGCAAGCGAAGGCAGAAGGGTTCAAAGTTGAGgtatggatgc ... attgatgcagATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCA
EST: ATTTTGGGTCTGCTGCTGAGCAAGCGAAGGCAGAAGGGTTCAAAGTTGAG ATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCAEST: gi|162160936|gb|FC337480.1|FC337480
genomic: ATTTTGGGTCTGCTGCTGAGCAAGCGAAGGCAGAAGGGTTCAAAGTTGAGgtatggatgc ... attgatgcagATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCA
EST: ATTTTGGGTCTGCTGCTGAGCAAGCGAAGGCAGAAGGGTTCAAAGTTGAG ATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCAEST: gi|100414433|gb|BY992772.1|BY992772
genomic: ATTTTGGGTCTGCTGCTGAGCAAGCGAAGGCAGAAGGGTTCAAAGTTGAGgtatggatgc ... attgatgcagATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCA
EST: ATTTTGGGTCTGCTGCTGAGCAAGCGAAGGCAGAAGGGTTCAAAGTTGAG ATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCA
genomic: ATTTTGGGTCTGCTGCTGAGCAAGCGAAGGCAGAAGGGTTCAAAGTTGAGgtatggatgc ... attgatgcagATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCA
gaaaataatctttgagtaagtagagcaatgtctcatcttgtgttcattgatgcagATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCAGTTGGTCGACGAGGATTGGCGGGTACATTATTTGTTCACAAG
cattgat putative branch site (score: 113)
taatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttacgggatattatttgatatgtaaatttttcattctaatcttgaaaataatctttgagtaagtagagcaatgtctcatcttgtgttcattgatgcagATGGTGATTGTGGGTGATGATTGTGCTCTCCCCCCTCCGCCACGAGGTCCAGTTGGTCGACGAGGATTGGCGGGTACATTATTTGTTCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT