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...atcaacattgataagccttggcaggacttctcgtgcagtctgttaaccattcatcttcatcgttattaaaacgatatcttatttttttttgatcatgcagATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTACTTATCTTGATGGAATTCCTGAG
species | Physcomitrella patens |
transcript | PP1S55_31V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATG ATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTAEST: gi|162159727|gb|FC336113.1|FC336113
genomic: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATGgtgagagata ... gatcatgcagATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTA
EST: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATG ATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTAEST: gi|18364593|gb|BJ196666.1|BJ196666
genomic: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATGgtgagagata ... gatcatgcagATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTA
EST: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATG ATGTTGTTAAAGAGTTGATTGAGGGAAGTGGTGGAGACATATCCTCACCTTEST: gi|162160936|gb|FC337480.1|FC337480
genomic: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATGgtgagagata ... gatcatgcagATGTTGTTAAAGAGTTGATTGAGGGA-GTGGTGGAGACATATCCTCACCTT
EST: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATG ATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTAEST: gi|100425663|gb|BY958708.1|BY958708
genomic: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATGgtgagagata ... gatcatgcagATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTA
EST: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATG ATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTAEST: gi|100389368|gb|BY971118.1|BY971118
genomic: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATGgtgagagata ... gatcatgcagATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTA
EST: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATG ATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTAEST: gi|162191126|gb|FC367388.1|FC367388
genomic: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATGgtgagagata ... gatcatgcagATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTA
EST: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATG ATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTA
genomic: AACGTCATAGGCAATGGCAAGAGCGAATAAGCTTATCAATGATCCCAATGgtgagagata ... gatcatgcagATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTA
accattcatcttcatcgttattaaaacgatatcttatttttttttgatcatgcagATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTACTTATCTTGATGGAATTCCTGAG
tcttatttttttttg CT-rich tract
ttattaaaacgatatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaacattgataagccttggcaggacttctcgtgcagtctgttaaccattcatcttcatcgttattaaaacgatatcttatttttttttgatcatgcagATGTTGTTAAAGAGTTGATTGAGGGAGTGGTGGAGACATATCCTCACCTTACTTATCTTGATGGAATTCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA