1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCAGTATTCGATCATCGCTACCGCGCCGCACAGGTGCTGCTATTGCAGgttccaatgtagtgttaggaacacatggttttcgagtgtgtaatgtcgtttacaaggtgtggaaggtgcgtttggtggtgatagggaacgtgcgtttgag...
species | Physcomitrella patens |
transcript | PP1S55_31V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCGATCATCGCTACCGCGCCGCACAGGTGCTGCTATTGCAG GAGTTGAGGTCCTTCCGAAATCTACGATTTGCAGGAAGATCGAGTAGTGTAEST: gi|162159727|gb|FC336113.1|FC336113
genomic: TTCGATCATCGCTACCGCGCCGCACAGGTGCTGCTATTGCAGgttccaatgt ... tcatttgcagGAGTTGAGGTCCTTCCGAAATCTACGATTTGCAGGAAGATCGAGTAGTGTA
EST: ATCGCTACCGCGCTGCACAGGTGCTGCTATTGCAG GAGTTGAGGTCCTTCCGAAATCTACGATTTGCAGGAAGATCGAGTAGTGTAEST: gi|18364593|gb|BJ196666.1|BJ196666
genomic: ATCGCTACCGCGCCGCACAGGTGCTGCTATTGCAGgttccaatgt ... tcatttgcagGAGTTGAGGTCCTTCCGAAATCTACGATTTGCAGGAAGATCGAGTAGTGTA
EST: TTCGATCATCGCTACCGCGCCGCACAGGTGCTGCTATTGCAG GAGTTGAGGTCCTTCCGAAATCTACGATTTGCAGGAAGATCGAGTAGTGTAEST: gi|100425663|gb|BY958708.1|BY958708
genomic: TTCGATCATCGCTACCGCGCCGCACAGGTGCTGCTATTGCAGgttccaatgt ... tcatttgcagGAGTTGAGGTCCTTCCGAAATCTACGATTTGCAGGAAGATCGAGTAGTGTA
EST: AGTATTCGATCATCGCTACCGCGCCGCACAGGTGCTGCTATTGCAG GAGTTGAGGTCCTTCCGAAATCTACGATTTGCAGGAAGATCGAGTAGTGTA
genomic: AGTATTCGATCATCGCTACCGCGCCGCACAGGTGCTGCTATTGCAGgttccaatgt ... tcatttgcagGAGTTGAGGTCCTTCCGAAATCTACGATTTGCAGGAAGATCGAGTAGTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGTATTCGATCATCGCTACCGCGCCGCACAGGTGCTGCTATTGCAGgttccaatgtagtgttaggaacacatggttttcgagtgtgtaatgtcgtttacaaggtgtggaaggtgcgtttggtggtgatagggaacgtgcgtttgag
- - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - GCTGCT