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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCCCAGTGCTCTTTATGCACAACAGAACTGCAAGGGTGCGTTATTATGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttacttcatggcattaactccttttttcttttttctttgttaatttttaaaaacattttacggtgtagggtttagcctcttctaaatgtaataata...

Basic information

species Physcomitrella patens
transcript PP1S55_276V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208377300|gb|DC927016.1|DC927016
EST:     TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG                         GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: gi|162263049|gb|FC439338.1|FC439338
EST:     TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG                         GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: gi|208361094|gb|DC957545.1|DC957545
EST:     TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG                         GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: gi|37852362|gb|BJ610370.1|BJ610370
EST:     TTTTTATCAAAACTATACAG                         GCTTGAAGGCAAACGAAGGTCCAACCAGGCAGAAAAGAGGATTGCGCCTTT
genomic: TTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGT-CAACCAGGCAGAAAAGAGGATTGCGCCTTT
EST: gi|162208085|gb|FC384553.1|FC384553
EST:     TGGACCTAGACAACTCGAATCTTTAATACTTTTTTATCAAAACTATACAG                         GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: gi|162208086|gb|FC384554.1|FC384554
EST:     TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG                         GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: gi|162263048|gb|FC439337.1|FC439337
EST:     TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG                         GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: gi|208395015|gb|DC915696.1|DC915696
EST:     TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG                         GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG