1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCCCTTTTTCGAGACAAGTGCGTCCTGTGTACGATGTCCTATCCACAATCTTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAGgtgaatcttttactcaactcttctgaaacttttgtggtaaggttcttgatccaatggtttcatttcaatgccggaagttcagacgctcatggcttgtcactaattaatttcggtggccaatttggtag
species | Physcomitrella patens |
transcript | PP1S55_276V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAG TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAAEST: gi|162263049|gb|FC439338.1|FC439338
genomic: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
EST: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAG TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAAEST: gi|208361094|gb|DC957545.1|DC957545
genomic: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
EST: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAG TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAAEST: gi|162208086|gb|FC384554.1|FC384554
genomic: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
EST: GAAGAGTCTTCAGTCAGGCCGAG TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAAEST: gi|162263048|gb|FC439337.1|FC439337
genomic: GAAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
EST: ACTGTCCACCATGTGGCCA-TGNAAGAGTCTTCAGTCAGGCCGAG TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAAEST: gi|208395015|gb|DC915696.1|DC915696
genomic: ACTGTCCACCATGTGGCCATTG-AAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
EST: TTCCCCACTGTCCACCATGTGGCCA-TGAAGAGTCTTCAGTCAGGCCGAG TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
genomic: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCTTTTTCGAGACAAGTGCGTCCTGTGTACGATGTCCTATCCACAATCTTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAGgtgaatcttttactcaactcttctgaaacttttgtggtaaggttcttgatccaatggtttcatttcaatgccggaagttcagacgctcatggcttgtcactaattaatttcggtggccaatttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA