Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgatttgaatttagtcgtggctggttactcttagcgaagccatatttgatgtgtggattctattttgcactgattgtcgtgtacatttgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAATGGGACGTACATGGCAGTGCTCCATTATGCAACGTGGTGCCCTTTTTCGA

Basic information

species Physcomitrella patens
transcript PP1S55_276V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348584|gb|DC913256.1|DC913256
EST:     AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAG                         TTGAATGAGACTACGTTGGAAAAAGCGTTAGGCCTGGTGCACAGTAGCAAT
genomic: AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
EST: gi|100448146|gb|CJ972445.1|CJ972445
EST:     AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAG                         TTGAATGAGACTACNTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
genomic: AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
EST: gi|208377300|gb|DC927016.1|DC927016
EST:     AGCACAATCATGCTGNCTNTGACCAGCCACTNTCCGCTCGAGTTGCGGAG                         TTGAATGAGACTACGTTGGGAAAAAGCGTTAGGCCTGGTGCACAGTAGCAA
genomic: AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTT-GGAAAAAGCGTTAGACCTGGTGCACAGTAGCAA
EST: gi|162263049|gb|FC439338.1|FC439338
EST:     CTCGAGTTGCGGAG                         TTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
genomic: CTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
EST: gi|208347059|gb|DC901866.1|DC901866
EST:     AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAG                         TTGAATGAGACTACGTTGGAAAGAGCGTTAGACCTGGTGCACAGTANCAAT
genomic: AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
EST: gi|100418045|gb|BY993309.1|BY993309
EST:     GCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTTGCG-AG                         TTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAA
genomic: GCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTT-GCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAA
EST: gi|208387699|gb|DC937264.1|DC937264
EST:     AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAG                         TTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
genomic: AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
EST: gi|100386374|gb|BY988041.1|BY988041
EST:     AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAG                         TTGAATGAGACTACGTTGGAAAA-GCGTTAGACCTGGTGCACAGTAGCAA
genomic: AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAA
EST: gi|100373539|gb|BY948973.1|BY948973
EST:     CACA-TCATGCTGCCTCTGNNAC-AGC-ACTATCCGCTCGAGTTGCGGAG                         TTGAATGAGACTACGTTGGANNAAGCGTTAGACCTGGTGCACAGTAGCAAT
genomic: CACAATCATGCTGCCTCTG--ACCAGCCACTATCCGCTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgatgtgtggattctattttgcactgattgtcgtgtacatttgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAATGGGACGTACATGGCAGTGCTCCATTATGCAACGTGGTGCCCTTTTTCGA
                         cactgat  putative branch site (score: 3)
              attctatttt  TA-rich tract