1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tattatgtgtagtatctcagcattaatattcgcattttaagcttttagtttaattcgttctttcgatcacaaccttatacagttcgcatttggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTGCAAGATTGGTTTATGATGCTGGCACTGAAATGAAAGAAGGCTGTCCCTA
species | Physcomitrella patens |
transcript | PP1S55_276V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTGEST: gi|162263049|gb|FC439338.1|FC439338
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTGEST: gi|208361094|gb|DC957545.1|DC957545
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTGEST: gi|37852362|gb|BJ610370.1|BJ610370
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: TTTTTATCAAAACTATACAG GCTTGAAGGCAAACGAAGGTCCAACCAGGCAGAAAAGAGGATTGCGCCTTTEST: gi|162208085|gb|FC384553.1|FC384553
genomic: TTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGT-CAACCAGGCAGAAAAGAGGATTGCGCCTTT
EST: TGGACCTAGACAACTCGAATCTTTAATACTTTTTTATCAAAACTATACAG GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTGEST: gi|162208086|gb|FC384554.1|FC384554
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTGEST: gi|162263048|gb|FC439337.1|FC439337
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTGEST: gi|208395015|gb|DC915696.1|DC915696
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
EST: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAG GCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
genomic: TGGACCTAGACAACTCGAATCCTTAATACTTTTTTATCAAAACTATACAGgtacttactt ... tggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTG
tagtttaattcgttctttcgatcacaaccttatacagttcgcatttggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTGCAAGATTGGTTTATGATGCTGGCACTGAAATGAAAGAAGGCTGTCCCTA
gtttaat putative branch site (score: 4)
ttataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattatgtgtagtatctcagcattaatattcgcattttaagcttttagtttaattcgttctttcgatcacaaccttatacagttcgcatttggtttacagGCTTGAAGGCAAACGAAGGTCAACCAGGCAGAAAAGAGGATTGCGCCTTTGCAAGATTGGTTTATGATGCTGGCACTGAAATGAAAGAAGGCTGTCCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG