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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatcttttactcaactcttctgaaacttttgtggtaaggttcttgatccaatggtttcatttcaatgccggaagttcagacgctcatggcttgtcactaattaatttcggtggccaatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAACAGAACTGCAAGGGTGCGTTATTATGGACCTAGACAACTCGAATCCTTA

Basic information

species Physcomitrella patens
transcript PP1S55_276V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208377300|gb|DC927016.1|DC927016
EST:     TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAG                         TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
genomic: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
EST: gi|162263049|gb|FC439338.1|FC439338
EST:     TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAG                         TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
genomic: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
EST: gi|208361094|gb|DC957545.1|DC957545
EST:     TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAG                         TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
genomic: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
EST: gi|162208086|gb|FC384554.1|FC384554
EST:     GAAGAGTCTTCAGTCAGGCCGAG                         TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
genomic: GAAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
EST: gi|162263048|gb|FC439337.1|FC439337
EST:     ACTGTCCACCATGTGGCCA-TGNAAGAGTCTTCAGTCAGGCCGAG                         TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
genomic: ACTGTCCACCATGTGGCCATTG-AAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
EST: gi|208395015|gb|DC915696.1|DC915696
EST:     TTCCCCACTGTCCACCATGTGGCCA-TGAAGAGTCTTCAGTCAGGCCGAG                         TGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA
genomic: TTCCCCACTGTCCACCATGTGGCCATTGAAGAGTCTTCAGTCAGGCCGAGgtgaatcttt ... aatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagttcagacgctcatggcttgtcactaattaatttcggtggccaatttggtagTGTTCTGTCTCAGTATGGAGTCCACAGTTTCCCAGTGCTCTTTATGCACAACAGAACTGCAAGGGTGCGTTATTATGGACCTAGACAACTCGAATCCTTA
                       tcactaattaattt  TA-rich tract