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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatttttttcttctgtcccttttcttgtcaggtttgatattttttattttttattttttattttttttaatgtcttgtcgtcatagcataatacaccaccaacttacttgaaggatcatatgtgttgtcagATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTTGGTTCTCAGGATCTAACGACAACATATGA

Basic information

species Physcomitrella patens
transcript PP1S507_6V6.1
intron # 25
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37835877|gb|BJ593889.1|BJ593889
EST:     TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTG                         ATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCCGT
genomic: TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTGgtacattttt ... gtgttgtcagATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCA-CCGT
EST: gi|162267908|gb|FC444509.1|FC444509
EST:     TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTG                         ATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTT
genomic: TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTGgtacattttt ... gtgttgtcagATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTT
EST: gi|162257295|gb|FC433378.1|FC433378
EST:     TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTG                         ATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTT
genomic: TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTGgtacattttt ... gtgttgtcagATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTT
EST: gi|37846624|gb|BJ604632.1|BJ604632
EST:     TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTG                         ATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTT
genomic: TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTGgtacattttt ... gtgttgtcagATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTT
EST: gi|162167053|gb|FC342515.1|FC342515
EST:     TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTG                         ATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTT
genomic: TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTGgtacattttt ... gtgttgtcagATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTT
EST: gi|37826697|gb|BJ584709.1|BJ584709
EST:     TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACNCTNTGCTTG                         ATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTT
genomic: TGTCTGCAACAACATTTTACTCTGAATCCGCTCAAGCTACACTCTGCTTGgtacattttt ... gtgttgtcagATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgtcatagcataatacaccaccaacttacttgaaggatcatatgtgttgtcagATACGAGTGGAGACAGATCCATCAGACAGGACACAACTGCGACTCACCGTTGGTTCTCAGGATCTAACGACAACATATGA
                        aacttac  putative branch site (score: 2)
           ataataca  TA-rich tract