1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
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ATTGATAAACAAATTCTTGCAACCAGTAACAGTGTCTGCAAACGACTTCGTAGCAAGGTGGCGAGCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTGgtaagcatcagtccatcttattttggagtttgcatctctgatgacgaaaatgttcgctcttacttttggcgaattactagcaagagaaatggatgtgtac...
species | Physcomitrella patens |
transcript | PP1S507_6V6.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: TAGCAAGGTGGCGAGCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTG GTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAACEST: gi|162257295|gb|FC433378.1|FC433378
genomic: TAGCAAGGTGGCGAGCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTGgtaagcatca ... tgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
EST: TAGCAAGGTGGCGAGCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTG GTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAACEST: gi|37846624|gb|BJ604632.1|BJ604632
genomic: TAGCAAGGTGGCGAGCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTGgtaagcatca ... tgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
EST: GAAGCTCCAAGAAGTG GTACGGAACGTCAGGCNTATGCCTNTGATTGAGATGGCAAATTTATTTAACEST: gi|162167053|gb|FC342515.1|FC342515
genomic: GAAGCTCCAAGAAGTGgtaagcatca ... tgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
EST: ATTGAAGCTCCAAGAAGTG GTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAACEST: gi|37826697|gb|BJ584709.1|BJ584709
genomic: ATTGAAGCTCCAAGAAGTGgtaagcatca ... tgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
EST: GCACTAGCTGGCCNTCCATTGAAGCTCCAAGAAGTG GTACGGAACGTCAGNCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
genomic: GCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTGgtaagcatca ... tgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATAAACAAATTCTTGCAACCAGTAACAGTGTCTGCAAACGACTTCGTAGCAAGGTGGCGAGCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTGgtaagcatcagtccatcttattttggagtttgcatctctgatgacgaaaatgttcgctcttacttttggcgaattactagcaagagaaatggatgtgtac
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagagaaa