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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaacttgttctacttctcttctctgtttatctttttctttctcttggatcttttggatcgttcgacactgctgttttatccatgggtgatgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAACAGCCTGCATATTGGTGTCGCTACCGGATTG

Basic information

species Physcomitrella patens
transcript PP1S507_6V6.1
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162267908|gb|FC444509.1|FC444509
EST:     TAGCAAGGTGGCGAGCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTG                         GTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
genomic: TAGCAAGGTGGCGAGCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTGgtaagcatca ... tgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
EST: gi|162257295|gb|FC433378.1|FC433378
EST:     TAGCAAGGTGGCGAGCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTG                         GTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
genomic: TAGCAAGGTGGCGAGCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTGgtaagcatca ... tgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
EST: gi|37846624|gb|BJ604632.1|BJ604632
EST:     GAAGCTCCAAGAAGTG                         GTACGGAACGTCAGGCNTATGCCTNTGATTGAGATGGCAAATTTATTTAAC
genomic: GAAGCTCCAAGAAGTGgtaagcatca ... tgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
EST: gi|162167053|gb|FC342515.1|FC342515
EST:     ATTGAAGCTCCAAGAAGTG                         GTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
genomic: ATTGAAGCTCCAAGAAGTGgtaagcatca ... tgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
EST: gi|37826697|gb|BJ584709.1|BJ584709
EST:     GCACTAGCTGGCCNTCCATTGAAGCTCCAAGAAGTG                         GTACGGAACGTCAGNCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC
genomic: GCACTAGCTGGCCCTCCATTGAAGCTCCAAGAAGTGgtaagcatca ... tgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatcttttggatcgttcgacactgctgttttatccatgggtgatgaatgctagGTACGGAACGTCAGGCCTATGCCTCTGATTGAGATGGCAAATTTATTTAACAGCCTGCATATTGGTGTCGCTACCGGATTG
                           tgttttat  TA-rich tract