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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCAAGGCTCTACTTCTTTCTGCCTTTGTTAAAATTCTGTTACATTCTCAACCTCAAGATCCTGATCTGCGGGAGCGTGTGCTAGAGATTTTCAAGAGgtgaaccactagaagctcagtaatggattcttatgatatcttggctagtaccttaaaccttgctgcaatttgggcaagtacgatttgcccaaaagttcgt...

Basic information

species Physcomitrella patens
transcript PP1S507_6V6.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162257296|gb|FC433379.1|FC433379
EST:     CAACCTCAAGATCCTGATCTGCGGGAGCGTGTGCTAGAGATTTTCAAGAG                         GTATGAATGCTCAGTCGATGCCGAAGTGCAGCAGCGGTGCATTGAGTATCT
genomic: CAACCTCAAGATCCTGATCTGCGGGAGCGTGTGCTAGAGATTTTCAAGAGgtgaaccact ... tttttggcagGTATGAATGCTCAGTCGATGCCGAAGTGCAGCAGCGGTGCATTGAGTATCT
EST: gi|162167054|gb|FC342516.1|FC342516
EST:     CAACCTCAAGATCCTGATCTGCGGGAGCGTGTGCTAGAGATTTTCAAGAG                         GTATGAATGCTCAGTCGATGCCGAAGTGCAGCAGCGGTGCATTGAGTATCT
genomic: CAACCTCAAGATCCTGATCTGCGGGAGCGTGTGCTAGAGATTTTCAAGAGgtgaaccact ... tttttggcagGTATGAATGCTCAGTCGATGCCGAAGTGCAGCAGCGGTGCATTGAGTATCT
EST: gi|162267909|gb|FC444510.1|FC444510
EST:     CAACCTCAAGATCCTGATCTGCGGGAGCGTGTGCTAGAGATTTTCAAGAG                         GTATGAATGCTCAGTCGATGCCGAAGTGCAGCAGCGGTGCATTGAGTATCT
genomic: CAACCTCAAGATCCTGATCTGCGGGAGCGTGTGCTAGAGATTTTCAAGAGgtgaaccact ... tttttggcagGTATGAATGCTCAGTCGATGCCGAAGTGCAGCAGCGGTGCATTGAGTATCT