Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcctgcccatctcttatcgttaaatatataggtataccaagaaagaaaactgagcgtgaataatttaggtgttatttaatacatatggactgagcacaatctttgcgtgttgatagattgatagcttgagaaactcaagaattttaagtgattgataacaattcactgactcaacaatgtatgattgtggcag

Basic information

species Physcomitrella patens
transcript PP1S422_8V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159839|gb|FC335884.1|FC335884
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37853472|gb|BJ611480.1|BJ611480
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162180480|gb|FC356122.1|FC356122
EST:     CGGAACGAGTCTCAATTTTTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162168186|gb|FC344916.1|FC344916
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37853543|gb|BJ611551.1|BJ611551
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37846039|gb|BJ604047.1|BJ604047
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37850687|gb|BJ608695.1|BJ608695
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37836143|gb|BJ594151.1|BJ594151
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162197735|gb|FC374985.1|FC374985
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162154074|gb|FC330309.1|FC330309
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162161406|gb|FC337612.1|FC337612
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|208388749|gb|DC953483.1|DC953483
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162264608|gb|FC441203.1|FC441203
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162217909|gb|FC393905.1|FC393905
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162240134|gb|FC418261.1|FC418261
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162168202|gb|FC344932.1|FC344932
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162210932|gb|FC387030.1|FC387030
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37832780|gb|BJ590792.1|BJ590792
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162176217|gb|FC352674.1|FC352674
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67569493|gb|BJ942317.1|BJ942317
EST:     TTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: TTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162178514|gb|FC354966.1|FC354966
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162153219|gb|FC329001.1|FC329001
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|18337523|gb|BJ169547.1|BJ169547
EST:     ACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: ACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162263557|gb|FC440093.1|FC440093
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162210236|gb|FC386422.1|FC386422
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162263558|gb|FC440094.1|FC440094
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37836958|gb|BJ594966.1|BJ594966
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162161405|gb|FC337611.1|FC337611
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTCCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162212921|gb|FC388929.1|FC388929
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162263890|gb|FC439185.1|FC439185
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|18336643|gb|BJ168666.1|BJ168666
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37850171|gb|BJ608179.1|BJ608179
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|208383013|gb|DC927763.1|DC927763
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37850798|gb|BJ608806.1|BJ608806
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162223444|gb|FC399074.1|FC399074
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162232949|gb|FC407550.1|FC407550
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162211184|gb|FC386896.1|FC386896
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162210250|gb|FC386423.1|FC386423
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162185868|gb|FC360968.1|FC360968
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162173037|gb|FC349169.1|FC349169
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162174037|gb|FC350552.1|FC350552
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162170489|gb|FC347648.1|FC347648
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162158123|gb|FC333918.1|FC333918
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162200568|gb|FC376763.1|FC376763
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162179285|gb|FC356234.1|FC356234
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162267692|gb|FC443474.1|FC443474
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67579071|gb|BJ951222.1|BJ951222
EST:     TCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: TCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|208357025|gb|DC922305.1|DC922305
EST:     CGGAACGAGTCCCAATTTNTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162225009|gb|FC401425.1|FC401425
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67693133|gb|BJ953366.1|BJ953366
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162185083|gb|FC362217.1|FC362217
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37839954|gb|BJ597962.1|BJ597962
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162178515|gb|FC354967.1|FC354967
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|100393831|gb|BY953524.1|BY953524
EST:     GGAACGAGTCCCATTTTCTCAGTCAAGACTTGGCAG-AGTGAGAGAGAAG                         GC-GTTTATTCCAAAGAAAAACAACTTCCAACAAGCTGGAGAGAG
genomic: GGAACGAGTCCCAATTTCTCAGTCAAGACTTG-CAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTT-ATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAG
EST: gi|162212155|gb|FC388265.1|FC388265
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67697421|gb|BJ957654.1|BJ957654
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162206607|gb|FC382365.1|FC382365
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162154075|gb|FC330310.1|FC330310
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162206608|gb|FC382366.1|FC382366
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67692760|gb|BJ952993.1|BJ952993
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37844461|gb|BJ602469.1|BJ602469
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37825680|gb|BJ583746.1|BJ583746
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|208396655|gb|DC920363.1|DC920363
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162153365|gb|FC329875.1|FC329875
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|19788686|gb|BQ040857.1|BQ040857
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|208382629|gb|DC919811.1|DC919811
EST:     CGGAACGAGTCCCAATTTNTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162277022|gb|FC453744.1|FC453744
EST:     CGGAACGAGTCCCAATTTTTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37849287|gb|BJ607295.1|BJ607295
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|67697189|gb|BJ957422.1|BJ957422
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162223443|gb|FC399073.1|FC399073
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162200016|gb|FC376478.1|FC376478
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162274811|gb|FC450838.1|FC450838
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162175798|gb|FC352100.1|FC352100
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|37836690|gb|BJ594698.1|BJ594698
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162162216|gb|FC337998.1|FC337998
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
EST: gi|162225470|gb|FC401222.1|FC401222
EST:     CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG                         GCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG
genomic: CGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 434

GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAGgtaattttcc ... attgtggcagGCCGTTATTCCCAAGGAAAACAACTTCCAACAAGCTGGAGAGAGGTTCCGGTCCTTTGACCCTGCTCGTCAAGACCGATTTATTAAGCGTATTGTTGAGC




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