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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagtctgattatccctctttgtatgttctaatatgtctaatgttttaccttagattctagcggttgctagggtactcagaagtgctttgatatatgtatcagtattcatctaaatttcaaatactacagttgcacttcgaatgctgacgttgtgaatatgttcaaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG

Basic information

species Physcomitrella patens
transcript PP1S422_8V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159839|gb|FC335884.1|FC335884
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37853472|gb|BJ611480.1|BJ611480
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162180480|gb|FC356122.1|FC356122
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTGGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162168186|gb|FC344916.1|FC344916
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37853543|gb|BJ611551.1|BJ611551
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|208353793|gb|DC906481.1|DC906481
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37846039|gb|BJ604047.1|BJ604047
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37850687|gb|BJ608695.1|BJ608695
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37836143|gb|BJ594151.1|BJ594151
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162197735|gb|FC374985.1|FC374985
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162154074|gb|FC330309.1|FC330309
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162161406|gb|FC337612.1|FC337612
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|208388749|gb|DC953483.1|DC953483
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162264608|gb|FC441203.1|FC441203
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162217909|gb|FC393905.1|FC393905
EST:     GAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: GAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162240134|gb|FC418261.1|FC418261
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162168202|gb|FC344932.1|FC344932
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162210932|gb|FC387030.1|FC387030
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37832780|gb|BJ590792.1|BJ590792
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162176217|gb|FC352674.1|FC352674
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162178514|gb|FC354966.1|FC354966
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162153219|gb|FC329001.1|FC329001
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162263557|gb|FC440093.1|FC440093
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162210236|gb|FC386422.1|FC386422
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162263558|gb|FC440094.1|FC440094
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37836958|gb|BJ594966.1|BJ594966
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162161405|gb|FC337611.1|FC337611
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162212921|gb|FC388929.1|FC388929
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162263890|gb|FC439185.1|FC439185
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|18336643|gb|BJ168666.1|BJ168666
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGGCGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37850171|gb|BJ608179.1|BJ608179
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|208383013|gb|DC927763.1|DC927763
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37850798|gb|BJ608806.1|BJ608806
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162223444|gb|FC399074.1|FC399074
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162232949|gb|FC407550.1|FC407550
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162211184|gb|FC386896.1|FC386896
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162210250|gb|FC386423.1|FC386423
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162185868|gb|FC360968.1|FC360968
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162173037|gb|FC349169.1|FC349169
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162174037|gb|FC350552.1|FC350552
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162170489|gb|FC347648.1|FC347648
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162158123|gb|FC333918.1|FC333918
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162200568|gb|FC376763.1|FC376763
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162179285|gb|FC356234.1|FC356234
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162267692|gb|FC443474.1|FC443474
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|208357025|gb|DC922305.1|DC922305
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162225009|gb|FC401425.1|FC401425
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|67693133|gb|BJ953366.1|BJ953366
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162185083|gb|FC362217.1|FC362217
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37839954|gb|BJ597962.1|BJ597962
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162178515|gb|FC354967.1|FC354967
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|100393831|gb|BY953524.1|BY953524
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGANTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162212155|gb|FC388265.1|FC388265
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|67697421|gb|BJ957654.1|BJ957654
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162206607|gb|FC382365.1|FC382365
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162154075|gb|FC330310.1|FC330310
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162206608|gb|FC382366.1|FC382366
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37844461|gb|BJ602469.1|BJ602469
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37825680|gb|BJ583746.1|BJ583746
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|67507796|gb|BJ940673.1|BJ940673
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|208396655|gb|DC920363.1|DC920363
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162153365|gb|FC329875.1|FC329875
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|19788686|gb|BQ040857.1|BQ040857
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|208382629|gb|DC919811.1|DC919811
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162277022|gb|FC453744.1|FC453744
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37849287|gb|BJ607295.1|BJ607295
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|67697189|gb|BJ957422.1|BJ957422
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162223443|gb|FC399073.1|FC399073
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162200016|gb|FC376478.1|FC376478
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162175798|gb|FC352100.1|FC352100
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|37836690|gb|BJ594698.1|BJ594698
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162162216|gb|FC337998.1|FC337998
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
EST: gi|162225470|gb|FC401222.1|FC401222
EST:     ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAG                         GTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC
genomic: ACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 99

GGGCCCTAACTATCTTATGTTACCCGTCAATGCTCCGAAGTGCGCTCATCACAACAATCACCATGAAGGATTCATGAACTTCATGCATCGTGACGAGGAGgtgaaagtct ... aaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatactacagttgcacttcgaatgctgacgttgtgaatatgttcaaatgtatagGTGAACTACTTTCCTTCTCGATTTGATCCCGTTCGTCATTCGGAACGAGTCCCAATTTCTCAGTCAAGACTTGCAGGAGTGAGAGAGAAG
                       tgctgac  putative branch site (score: 99)
                                             aaatgtata  TA-rich tract