Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTTCTGCAACAGTCCCGTGAGACAGTCCCATATTGAGGCCTCTCCGATTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgacttgtgacgcccacctgaggtaattgaagagtgggattttgatgggtttttggtcttgtggagacatcttgcgtggttttggtggaagtccgatgtagaaacggtgattggaatgttatgagcggaattgggttgtgggattgagtgtgttgagagctgtttttgattggtgcggtgtgggtcctgcag

Basic information

species Physcomitrella patens
transcript PP1S422_8V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100416574|gb|BY975453.1|BY975453
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGGGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162174038|gb|FC350553.1|FC350553
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100406803|gb|BY955728.1|BY955728
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18346572|gb|BJ178617.1|BJ178617
EST:     AGTAGTTTTCAATCGGCCGAGGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: AGTAGTTTTCAATCGGCCGA-GGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|67573802|gb|BJ946626.1|BJ946626
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100369936|gb|BY967449.1|BY967449
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100435548|gb|BY960968.1|BY960968
EST:     AGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: AGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100377031|gb|BY949584.1|BY949584
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|208375389|gb|DC940471.1|DC940471
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|67574032|gb|BJ946856.1|BJ946856
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100384275|gb|BY969406.1|BY969406
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18355835|gb|BJ187894.1|BJ187894
EST:     AGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: AGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18328415|gb|BJ160420.1|BJ160420
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100439238|gb|BY980163.1|BY980163
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100404321|gb|BY973518.1|BY973518
EST:     AGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: AGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100383849|gb|BY987106.1|BY987106
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100358243|gb|BY965545.1|BY965545
EST:     AGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: AGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100384130|gb|BY950516.1|BY950516
EST:     AGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: AGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100387364|gb|BY970508.1|BY970508
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100363367|gb|BY966366.1|BY966366
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162176218|gb|FC352675.1|FC352675
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100363216|gb|BY984415.1|BY984415
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162158124|gb|FC333919.1|FC333919
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162240135|gb|FC418262.1|FC418262
EST:     ATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: ATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100442062|gb|BY962955.1|BY962955
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100424749|gb|BY976796.1|BY976796
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162212922|gb|FC388930.1|FC388930
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100401479|gb|BY991023.1|BY991023
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGACGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162180481|gb|FC356123.1|FC356123
EST:     TTCGTGGACAGTAGTAGTTTTCGATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100412255|gb|BY956490.1|BY956490
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|208349797|gb|DC905921.1|DC905921
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162179286|gb|FC356235.1|FC356235
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100351759|gb|BY964535.1|BY964535
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100376391|gb|BY986144.1|BY986144
EST:     AGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: AGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100448612|gb|CJ972911.1|CJ972911
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100424407|gb|BY958469.1|BY958469
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162168187|gb|FC344917.1|FC344917
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162200569|gb|FC376764.1|FC376764
EST:     GGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: GGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100431915|gb|BY978570.1|BY978570
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100385215|gb|BY950807.1|BY950807
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100389540|gb|BY989018.1|BY989018
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100420257|gb|BY975975.1|BY975975
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162170490|gb|FC347649.1|FC347649
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100364233|gb|BY984510.1|BY984510
EST:     TTCGTGGACAGTAGCAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|18357322|gb|BJ189381.1|BJ189381
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|162263644|gb|FC438880.1|FC438880
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100447819|gb|CJ972118.1|CJ972118
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100364231|gb|BY984509.1|BY984509
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
EST: gi|100369113|gb|BY985025.1|BY985025
EST:     TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGT                         GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG
genomic: TTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 324

ACACTTCTGCAACAGTCCCGTGAGACAGTCCCATATTGAGGCCTCTCCGATTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgact ... ggtcctgcagGAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACACTTCTGCAACAGTCCCGTGAGACAGTCCCATATTGAGGCCTCTCCGATTCGTGGACAGTAGTAGTTTTCAATCGGCCGAGGAGTGTGCAATTGTCGTgtaagtgacttgtgacgcccacctgaggtaattgaagagtgggattttgatgggtttttggtcttgtggagacatcttgcgtggttttggtggaagtccgatgtagaaacggtgattggaatgttatgagcggaattgggttgtgggattgagtgtgttgagagctgtttttgattggtgcggtgtgggtcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG