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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgtttcctcactttcgcgatgttcttgacgcatcttggtctttgagcggttcttcagactgcggtatggcattattgattttctatgaagtgatc...

Basic information

species Physcomitrella patens
transcript PP1S422_8V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100416574|gb|BY975453.1|BY975453
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAACCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162174038|gb|FC350553.1|FC350553
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162264609|gb|FC441204.1|FC441204
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100406803|gb|BY955728.1|BY955728
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCNTTTCTGGACTACAAACCAGGG
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACC-TTTCTGGACTACAAACCAGGG
EST: gi|18346572|gb|BJ178617.1|BJ178617
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|67573802|gb|BJ946626.1|BJ946626
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100369936|gb|BY967449.1|BY967449
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100435548|gb|BY960968.1|BY960968
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100377031|gb|BY949584.1|BY949584
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|208375389|gb|DC940471.1|DC940471
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|67574032|gb|BJ946856.1|BJ946856
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100384275|gb|BY969406.1|BY969406
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18355835|gb|BJ187894.1|BJ187894
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|18328415|gb|BJ160420.1|BJ160420
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100439238|gb|BY980163.1|BY980163
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100404321|gb|BY973518.1|BY973518
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162157350|gb|FC333465.1|FC333465
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100383849|gb|BY987106.1|BY987106
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100358243|gb|BY965545.1|BY965545
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100384130|gb|BY950516.1|BY950516
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100387364|gb|BY970508.1|BY970508
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100363367|gb|BY966366.1|BY966366
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162176218|gb|FC352675.1|FC352675
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100363216|gb|BY984415.1|BY984415
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162158124|gb|FC333919.1|FC333919
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|67569863|gb|BJ942687.1|BJ942687
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162240135|gb|FC418262.1|FC418262
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100442062|gb|BY962955.1|BY962955
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100424749|gb|BY976796.1|BY976796
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162212922|gb|FC388930.1|FC388930
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100401479|gb|BY991023.1|BY991023
EST:     CCGAGGACGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162180481|gb|FC356123.1|FC356123
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCATGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100412255|gb|BY956490.1|BY956490
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|208349797|gb|DC905921.1|DC905921
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162179286|gb|FC356235.1|FC356235
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100351759|gb|BY964535.1|BY964535
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100376391|gb|BY986144.1|BY986144
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100448612|gb|CJ972911.1|CJ972911
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100424407|gb|BY958469.1|BY958469
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162168187|gb|FC344917.1|FC344917
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162200569|gb|FC376764.1|FC376764
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100431915|gb|BY978570.1|BY978570
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100385215|gb|BY950807.1|BY950807
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100389540|gb|BY989018.1|BY989018
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162267693|gb|FC443475.1|FC443475
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|208383448|gb|DC911200.1|DC911200
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100420257|gb|BY975975.1|BY975975
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162170490|gb|FC347649.1|FC347649
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100364233|gb|BY984510.1|BY984510
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|162263644|gb|FC438880.1|FC438880
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100447819|gb|CJ972118.1|CJ972118
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100364231|gb|BY984509.1|BY984509
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
EST: gi|100369113|gb|BY985025.1|BY985025
EST:     CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAG                         TATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA
genomic: CCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 351

GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgttt ... taatttgcagTATCGACCATCGAGCCAATACAACACACCTTTCTGGACTACAAACCAGGGATCACCAGTATGGAACAACAATAACTCCTTGACAGTTGGCCCAAGAGGAC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGAGGACCAGCCGAGGGCGGCGTGTGAAGAAGCGTTTCTGTTGCCATGGATCCTTACAAGgtaggtgtttcctcactttcgcgatgttcttgacgcatcttggtctttgagcggttcttcagactgcggtatggcattattgattttctatgaagtgatc

- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - CATGGA