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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACCCACGTGGGTTTGCCGTCAAATTTTACACTCGGGAGGGTAACTTTGACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttctacgcttattctacgtgccttgtggtacatgagtttgcacaagttagctgtaatatttacagaatccttctggtcagatatttgcgatgaag...

Basic information

species Physcomitrella patens
transcript PP1S422_8V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100416574|gb|BY975453.1|BY975453
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTTCCTGACATGATCCACGCCTTGNATGC-AAACCCAAAGAGTCACATCCA
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAA-GCCAAACCCAAAGAGTCACATCCA
EST: gi|162174038|gb|FC350553.1|FC350553
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162264609|gb|FC441204.1|FC441204
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100406803|gb|BY955728.1|BY955728
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTTGA-GCCCCAACCCAA-GAGTCACATCC
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTT-GAAGCCA-AACCCAAAGAGTCACATCC
EST: gi|67573802|gb|BJ946626.1|BJ946626
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100369936|gb|BY967449.1|BY967449
EST:     CATGGTTTGGCA-TAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGNAANGC-AAANCCAA-GAGTCACATCC
genomic: CATGGTT-GGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTG-AA-GCCAAACCCAAAGAGTCACATCC
EST: gi|100435548|gb|BY960968.1|BY960968
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100377031|gb|BY949584.1|BY949584
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|208375389|gb|DC940471.1|DC940471
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|67574032|gb|BJ946856.1|BJ946856
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162225471|gb|FC401223.1|FC401223
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100384275|gb|BY969406.1|BY969406
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100404321|gb|BY973518.1|BY973518
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162157350|gb|FC333465.1|FC333465
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100383849|gb|BY987106.1|BY987106
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAA                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100358243|gb|BY965545.1|BY965545
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162153220|gb|FC329002.1|FC329002
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100384130|gb|BY950516.1|BY950516
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100387364|gb|BY970508.1|BY970508
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGNAAGC-AAANCCAAAGAGTCACATCCC
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTG-AAGCCAAACCCAAAGAGTCACATCC-
EST: gi|100363367|gb|BY966366.1|BY966366
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCC
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCC
EST: gi|162176218|gb|FC352675.1|FC352675
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100363216|gb|BY984415.1|BY984415
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATAAAG                         TTCCCTGACATGATCCACGCCCTTGA-GCCAAACCCAAAGAGTCACATCCC
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCC-TTGAAGCCAAACCCAAAGAGTCACATCC-
EST: gi|162158124|gb|FC333919.1|FC333919
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|67569863|gb|BJ942687.1|BJ942687
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162240135|gb|FC418262.1|FC418262
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100442062|gb|BY962955.1|BY962955
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100424749|gb|BY976796.1|BY976796
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCCTTGA-GCCAAACC-AAAGAGTCACATCCA
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCC-TTGAAGCCAAACCCAAAGAGTCACATCCA
EST: gi|162212922|gb|FC388930.1|FC388930
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100401479|gb|BY991023.1|BY991023
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162180481|gb|FC356123.1|FC356123
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCGAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100412255|gb|BY956490.1|BY956490
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGGAAGCCAA-CCCAAAGAGTCACATCCA
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTG-AAGCCAAACCCAAAGAGTCACATCCA
EST: gi|208349797|gb|DC905921.1|DC905921
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162179286|gb|FC356235.1|FC356235
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100351759|gb|BY964535.1|BY964535
EST:     ATGGTTGGCAATAATATTCCAGTCTTTCT-CATCCGAAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTTGAAGCCAAACCCCAAGAAGTCACATTC
genomic: ATGGTTGGCAATAATATTCCAGTCTT-CTTCATCCGA-GACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTT-GAAGCCAAACCCAAAGA-GTCACAT-C
EST: gi|100444734|gb|BY982563.1|BY982563
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100376391|gb|BY986144.1|BY986144
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100448612|gb|CJ972911.1|CJ972911
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCNAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100424407|gb|BY958469.1|BY958469
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCCTTGA-GCCAAACCCAAAGAGTCACATCCA
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCC-TTGAAGCCAAACCCAAAGAGTCACATCCA
EST: gi|162168187|gb|FC344917.1|FC344917
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162200569|gb|FC376764.1|FC376764
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100431915|gb|BY978570.1|BY978570
EST:     ACATGGGTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGGCCAA-CCCAAAGAGTCACATCCA
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAG-CCAAACCCAAAGAGTCACATCCA
EST: gi|100385215|gb|BY950807.1|BY950807
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCCAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100389540|gb|BY989018.1|BY989018
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCCAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162267693|gb|FC443475.1|FC443475
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|208383448|gb|DC911200.1|DC911200
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162170490|gb|FC347649.1|FC347649
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162221788|gb|FC398355.1|FC398355
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162175799|gb|FC352101.1|FC352101
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100441089|gb|BY980710.1|BY980710
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100364233|gb|BY984510.1|BY984510
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGGAGCC
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCC
EST: gi|162162217|gb|FC337999.1|FC337999
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162185084|gb|FC362218.1|FC362218
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162185869|gb|FC360969.1|FC360969
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|162263644|gb|FC438880.1|FC438880
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100447819|gb|CJ972118.1|CJ972118
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCNG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG
EST: gi|100369113|gb|BY985025.1|BY985025
EST:     ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAG                         TTCCCTGACATGATCCACGCCTTGNAGCCAAACCCAAAGAGTCACATCCAG
genomic: ACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 305

CGACCCACGTGGGTTTGCCGTCAAATTTTACACTCGGGAGGGTAACTTTGACATGGTTGGCAATAATATTCCAGTCTTCTTCATCCGAGACGGTATTAAGgtatcttcta ... ttgtgtgcagTTCCCTGACATGATCCACGCCTTGAAGCCAAACCCAAAGAGTCACATCCAGGAGGCATGGCGAATAATGGACTTTTTCTCGCACGTTCCCGAATCCTGCA




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