1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaactgccgataatcactaccttcattgatatgttggtttgaacatttcctttgttgattaatgacatgactctttatcttgaaggtttgaagaggagcgtattaatcacatcttgctaatcaggcattcactttgcgctcttctttcagGCAGCTAAACGTGCAGGGTGGTTGCCAGAAGATGAATCCCAACTTCCACGAGCCAGGCACGTTGGGTTTGGTCTAGTGCTTGGTGCCGATGGGAAGCGAT
species | Physcomitrella patens |
transcript | PP1S39_120V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATATGTTACAGATGTGGGTCAGTCCCAGCATTTTGATATGGTCTTTAAG GCAGCTAAACGTGCAGGGTGGTTGCCAGAAGATGAATCCCAACTTCCACGAEST: gi|100379082|gb|BY986565.1|BY986565
genomic: TATATGTTACAGATGTGGGTCAGTCCCAGCATTTTGATATGGTCTTTAAGgtaactgccg ... cttctttcagGCAGCTAAACGTGCAGGGTGGTTGCCAGAAGATGAATCCCAACTTCCACGA
EST: TATATGTTACAGATGTGGGTCAGTCCCAGCATTTTGATATGGTCTTTAAG GCAGCTAAACGTGCAGGGTGGTTGCCAGAAGATGAATCCCAACTTCCACGAEST: gi|162153393|gb|FC329903.1|FC329903
genomic: TATATGTTACAGATGTGGGTCAGTCCCAGCATTTTGATATGGTCTTTAAGgtaactgccg ... cttctttcagGCAGCTAAACGTGCAGGGTGGTTGCCAGAAGATGAATCCCAACTTCCACGA
EST: TATATGTTACAGATGTGGGTCAGTCCCAGCATTTTGATATGGTCTTTAAG GCAGCTAAACGTGCAGGGTGGTTGCCAEST: gi|162166327|gb|FC342920.1|FC342920
genomic: TATATGTTACAGATGTGGGTCAGTCCCAGCATTTTGATATGGTCTTTAAGgtaactgccg ... cttctttcagGCAGCTAAACGTGCAGGGTGGTTGCCA
EST: AGCATTTTGATATGGTCTTTAAG GCAGCTAAACGTGCAGGGTGGTTGCCAGAAGATGAATCCCAACTTCCACGA
genomic: AGCATTTTGATATGGTCTTTAAGgtaactgccg ... cttctttcagGCAGCTAAACGTGCAGGGTGGTTGCCAGAAGATGAATCCCAACTTCCACGA
gagcgtattaatcacatcttgctaatcaggcattcactttgcgctcttctttcagGCAGCTAAACGTGCAGGGTGGTTGCCAGAAGATGAATCCCAACTTCCACGAGCCAGGCACGTTGGGTTTGGTCTAGTGCTTGGTGCCGATGGGAAGCGAT
tgctaat putative branch site (score: 5)
ttcactttgcgctctt putative PPT
tattaatca TA-rich tract