1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGCAACACAGCAGTCTATTTGTTGTATGCTCATGCCCGAATCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatttggctgccataatagaataattatatgtgtatgctttgaaaggttaaactgttgaaccgctttaagggctcagtagctgcaatgattatt...
species | Physcomitrella patens |
transcript | PP1S39_120V6.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|67700770|gb|BJ961003.1|BJ961003
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: AAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|100379082|gb|BY986565.1|BY986565
genomic: AAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|37851029|gb|BJ609037.1|BJ609037
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|162166326|gb|FC342919.1|FC342919
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|162182040|gb|FC356911.1|FC356911
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAEST: gi|162181520|gb|FC358134.1|FC358134
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACA
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|162177126|gb|FC353179.1|FC353179
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|208368827|gb|DC951351.1|DC951351
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: GAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|162153392|gb|FC329902.1|FC329902
genomic: GAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|162253080|gb|FC428912.1|FC428912
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|162196480|gb|FC374406.1|FC374406
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|162196479|gb|FC374405.1|FC374405
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|162166327|gb|FC342920.1|FC342920
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAGEST: gi|67724030|gb|BJ974289.1|BJ974289
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
EST: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAG ACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
genomic: TCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatt ... gcttacgcagACTGGACAGATGAAGCTACAACATCCAAGTGAGAGAGCATTGGGTTTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAACACAGCAGTCTATTTGTTGTATGCTCATGCCCGAATCTGCTCCATAATTCGAAAATCTGAAAAGAATGTCGAGGAGCTCAAGAAGgtaagtcatttggctgccataatagaataattatatgtgtatgctttgaaaggttaaactgttgaaccgctttaagggctcagtagctgcaatgattatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG