1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GACGTGAAGGCGAGTGGTCTGCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttctctccaaatagttgtttcctaagtaacatgattctgtcttgatgtcattctgatatgttaatcttctagacctgacattacttgtggatctatgtag
species | Physcomitrella patens |
transcript | PP1S39_120V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAA ATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGAEST: gi|100379082|gb|BY986565.1|BY986565
genomic: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttc ... atctatgtagATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
EST: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAA ATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGAEST: gi|37851029|gb|BJ609037.1|BJ609037
genomic: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttc ... atctatgtagATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
EST: GGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAA ATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGAEST: gi|162166326|gb|FC342919.1|FC342919
genomic: GGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttc ... atctatgtagATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
EST: GGGCTATGGCGCCATTAA ATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGAEST: gi|162182040|gb|FC356911.1|FC356911
genomic: GGGCTATGGCGCCATTAAgtaaatcttc ... atctatgtagATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
EST: GAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAA ATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGAEST: gi|162181520|gb|FC358134.1|FC358134
genomic: GAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttc ... atctatgtagATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
EST: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAA ATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGAEST: gi|162153392|gb|FC329902.1|FC329902
genomic: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttc ... atctatgtagATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
EST: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAA ATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGAEST: gi|162196480|gb|FC374406.1|FC374406
genomic: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttc ... atctatgtagATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
EST: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAA ATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGAEST: gi|162196479|gb|FC374405.1|FC374405
genomic: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttc ... atctatgtagATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
EST: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAA ATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGAEST: gi|162166327|gb|FC342920.1|FC342920
genomic: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttc ... atctatgtagATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
EST: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAA ATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
genomic: GCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttc ... atctatgtagATATGCGGATTTGAAGAATAACAGGTTGACAAATTATACCTTCAATTTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGTGAAGGCGAGTGGTCTGCCGAGGAGCTAGAGGAAGCTGCAGAGGCTCTGGGCTATGGCGCCATTAAgtaaatcttctctccaaatagttgtttcctaagtaacatgattctgtcttgatgtcattctgatatgttaatcttctagacctgacattacttgtggatctatgtag
- - - - - - - - - - - GAGGAG
- - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - CTGCAG