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...gaagtcttcaaccagaaacacagaaattcttcttatctgacttgagtgtatggataattatcaacctctgcttgaattctacacatcttgaaattttcagAAACTTCATCAATTATTGTCACATGGAGTTGGAGAATGGGCGCCTGCGCTGTCCTACAAGCGAGTAGTGGTTGACTTTTCATCTCCGAATATCGCAAAGG
species | Physcomitrella patens |
transcript | PP1S39_120V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGGCCTGGCTTTGTTAATATCAAGCTGTCGGACAGGTGGATTGAGAAG AAACTTCATCAATTATTGTCACATGGAGTTGGAGAATGGGCGCCTGCGCTGEST: gi|162164045|gb|FC339320.1|FC339320
genomic: CTGGGCCTGGCTTTGTTAATATCAAGCTGTCGGACAGGTGGATTGAGAAGgttagtggtt ... aaattttcagAAACTTCATCAATTATTGTCACATGGAGTTGGAGAATGGGCGCCTGCGCTG
EST: CTGGGCCTGGCTTTGTTAATATCAAGCTGTCGGACAGGTGGATTGAGAAG AAACTTCATCAATTATTGTCACATGGAGTTGGAGAATGGGCGCCTGCGCTG
genomic: CTGGGCCTGGCTTTGTTAATATCAAGCTGTCGGACAGGTGGATTGAGAAGgttagtggtt ... aaattttcagAAACTTCATCAATTATTGTCACATGGAGTTGGAGAATGGGCGCCTGCGCTG
gtgtatggataattatcaacctctgcttgaattctacacatcttgaaattttcagAAACTTCATCAATTATTGTCACATGGAGTTGGAGAATGGGCGCCTGCGCTGTCCTACAAGCGAGTAGTGGTTGACTTTTCATCTCCGAATATCGCAAAGG
ttttc CT-rich tract
ataattatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtcttcaaccagaaacacagaaattcttcttatctgacttgagtgtatggataattatcaacctctgcttgaattctacacatcttgaaattttcagAAACTTCATCAATTATTGTCACATGGAGTTGGAGAATGGGCGCCTGCGCTGTCCTACAAGCGAGTAGTGGTTGACTTTTCATCTCCGAATATCGCAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacaca