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GTGCACAGCAGACTGTGGGTGGATTACTGGTCACAGCTACCTGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagcatctgttgtttgttcgtagagttcttcttgccaatctagagaccctttctttgtgatctgtttcgaaacgtcgttcactgtgaatcacatttttttgtatggagaaatcgatattcagtgcttacatggatgctttctgagcattggtaccacggtgtgcacag
species | Physcomitrella patens |
transcript | PP1S398_15V6.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATATEST: gi|162163342|gb|FC339668.1|FC339668
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATATEST: gi|162197340|gb|FC372302.1|FC372302
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATATEST: gi|162208860|gb|FC384996.1|FC384996
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATATEST: gi|162255648|gb|FC431646.1|FC431646
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATATEST: gi|162257811|gb|FC434009.1|FC434009
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG GTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATATEST: gi|162178871|gb|FC354803.1|FC354803
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCCCAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATAT
EST: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGG GTCCCNCA-CTATCCAGATGCANGTCGCTGCTGGGACATAGTAGACAAATA
genomic: TGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagca ... gtgtgcacagGTCCC-CAACTATCCAGATGCAGGTCGCTGCTGGGACATAGTAGACAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCACAGCAGACTGTGGGTGGATTACTGGTCACAGCTACCTGACATATGGCCCTCTTCTCAACGGTGCTAGCATGGTTGTCTTTGAAGGGgtaagcagcatctgttgtttgttcgtagagttcttcttgccaatctagagaccctttctttgtgatctgtttcgaaacgtcgttcactgtgaatcacatttttttgtatggagaaatcgatattcagtgcttacatggatgctttctgagcattggtaccacggtgtgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG