1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgggcaccttcaaggaatagcccgagtttatttgatcagaaattgaagaatttcgttcaatattaaccaactactggaagactggtctatttctaaacgtattgcaattttcttgattatttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAG
species | Physcomitrella patens |
transcript | PP1S398_15V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCGGATGGTCACACTGTAG GTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCGEST: gi|162187285|gb|FC363235.1|FC363235
genomic: GCGGATGGTCACACTGTAGgtgggcacct ... ttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
EST: TATTGTTGATGATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAG GTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCGEST: gi|162208860|gb|FC384996.1|FC384996
genomic: TATTGTTGATGATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAGgtgggcacct ... ttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
EST: CATTATCACGTGCATCAGCGGATGGTCACACTGTAG GTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCGEST: gi|162257811|gb|FC434009.1|FC434009
genomic: CATTATCACGTGCATCAGCGGATGGTCACACTGTAGgtgggcacct ... ttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
EST: ATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAG GTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCGEST: gi|162178871|gb|FC354803.1|FC354803
genomic: ATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAGgtgggcacct ... ttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
EST: TATTGTTGATGATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAG GTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
genomic: TATTGTTGATGATGCATTATCACGTGCATCAGCGGATGGTCACACTGTAGgtgggcacct ... ttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCG
ggaagactggtctatttctaaacgtattgcaattttcttgattatttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAG
aattttcttgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggcaccttcaaggaatagcccgagtttatttgatcagaaattgaagaatttcgttcaatattaaccaactactggaagactggtctatttctaaacgtattgcaattttcttgattatttgcgtgcagGTATGTGCCTGACATATGACAATAGTTCTGCATTGAAGAGAGAGGAGACCGCGTGGACAGAAGGCCGTGATTCGTGGTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG