1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ataattcaattggtatattgtaatgaggaaaaacttgtagaatttaatgtagatcatttcattcactgatctgttggcatgctttcgctttcacctgcagCCTGCTGTAGTAGACGATAATGCTCAAGAACAGTCTGGAGAATGTAGTGGTTACTTGTGTATCAAGGCGGCCTGGCCTGGCATGATGAGAACTCTACAAG
species | Physcomitrella patens |
transcript | PP1S398_15V6.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGCTCTTAAACCTGGATCTGCTACCTTACCCTTCTTTGGTGTCCAG CCTGCTGTAGTAGACGATAATGCTCAAGAACAGTCTGGAGAATGTAGTGGTEST: gi|162163342|gb|FC339668.1|FC339668
genomic: CTTGGGCTCTTAAACCTGGATCTGCTACCTTACCCTTCTTTGGTGTCCAGgtgcgatgtg ... tcacctgcagCCTGCTGTAGTAGACGATAATGCTCAAGAACAGTCTGGAGAATGTAGTGGT
EST: CTTGGGCTCTTAAACCTGGATCTGCTACCTTACCCTTCTTTGGTGTCCAG CCTGCTGTGGTAGACGATAATGCTCAEST: gi|162255648|gb|FC431646.1|FC431646
genomic: CTTGGGCTCTTAAACCTGGATCTGCTACCTTACCCTTCTTTGGTGTCCAGgtgcgatgtg ... tcacctgcagCCTGCTGTAGTAGACGATAATGCTCA
EST: CTTGGGCTCTTAAACCTGGATCTGCTACCTTACCCTTCTTTGGTGTCCAG CCTGCTGTAGTAGACGATAATGCTCAAGAACAGTCTGGAGAATGTAGTGGTEST: gi|162257811|gb|FC434009.1|FC434009
genomic: CTTGGGCTCTTAAACCTGGATCTGCTACCTTACCCTTCTTTGGTGTCCAGgtgcgatgtg ... tcacctgcagCCTGCTGTAGTAGACGATAATGCTCAAGAACAGTCTGGAGAATGTAGTGGT
EST: CTTGGGCTCTTAAACCTGGATCTGCTACCTTACCCTTCTTTGGTGTCCAG CCTGCTGTAGTAGACGATAATGCTCAAGAACAGTCTGGAGAATGTAGTGGT
genomic: CTTGGGCTCTTAAACCTGGATCTGCTACCTTACCCTTCTTTGGTGTCCAGgtgcgatgtg ... tcacctgcagCCTGCTGTAGTAGACGATAATGCTCAAGAACAGTCTGGAGAATGTAGTGGT
aatgtagatcatttcattcactgatctgttggcatgctttcgctttcacctgcagCCTGCTGTAGTAGACGATAATGCTCAAGAACAGTCTGGAGAATGTAGTGGTTACTTGTGTATCAAGGCGGCCTGGCCTGGCATGATGAGAACTCTACAAG
cactgat putative branch site (score: 12)
ctttcgctttcacct putative PPT
atttcatt TA-rich tract