1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ataatatcttggcccaaatttatcagtagtttattggagacagtttgaaatgcacgcatctggtgttctaatatatgtatctggtacgtggttgtgaaagCCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGAGAGCCGATCAATCCCAGTGCGTGGAAGTGGTACCATGAAGTCGTTGGCG
species | Physcomitrella patens |
transcript | PP1S398_15V6.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAG CCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGAEST: gi|162163342|gb|FC339668.1|FC339668
genomic: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAGgtatttttgg ... gttgtgaaagCCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGA
EST: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAG CCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGAEST: gi|162197340|gb|FC372302.1|FC372302
genomic: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAGgtatttttgg ... gttgtgaaagCCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGA
EST: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAG CCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGAEST: gi|162208860|gb|FC384996.1|FC384996
genomic: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAGgtatttttgg ... gttgtgaaagCCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGA
EST: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAG CCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGAEST: gi|162255648|gb|FC431646.1|FC431646
genomic: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAGgtatttttgg ... gttgtgaaagCCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGA
EST: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAG CCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGAEST: gi|162257811|gb|FC434009.1|FC434009
genomic: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAGgtatttttgg ... gttgtgaaagCCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGA
EST: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAG CCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGA
genomic: TCTATACTGCCCCAACTGCAATTCGTTCATTGATGCGGTCGGGTGACGAGgtatttttgg ... gttgtgaaagCCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGA
tgaaatgcacgcatctggtgttctaatatatgtatctggtacgtggttgtgaaagCCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGAGAGCCGATCAATCCCAGTGCGTGGAAGTGGTACCATGAAGTCGTTGGCG
ttctaat putative branch site (score: 2)
ttctaatatatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatatcttggcccaaatttatcagtagtttattggagacagtttgaaatgcacgcatctggtgttctaatatatgtatctggtacgtggttgtgaaagCCCGTTTTACGGCACTCTCGTAAGTCACTGCGAGTGCTTGGGACTGTGGGAGAGCCGATCAATCCCAGTGCGTGGAAGTGGTACCATGAAGTCGTTGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG