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gtaattgacttcattcgattcgttgctttgtttcgtcagttaccgatctgttgacgatgcttcctgcaatcctcaaaattggctcgggcgccatgttctaacttgcgtgtgttggatgaatgcctactgattcatttgcaatgaatgcatgcagGTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATGGTTCGATTGTTGAAGCAACTGCAGCAGACTCTGCATCCTGATGCTCTTG
species | Physcomitrella patens |
transcript | PP1S207_33V6.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TGGGCCCAAATAATCAATATCTCTCTAAAATCATCTCTGTTTTTGCTGAG GTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATGEST: gi|162170619|gb|FC347115.1|FC347115
genomic: TGGGCCCAAATAATCAATATCTCTCTAAAATCATCTCTGTTTTTGCTGAGgtaattgact ... atgcatgcagGTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATG
EST: TGGGCCCAAATAATCAATATCTCTCTAAAATCATCTCTGTTTTTGCTGAG GTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATGEST: gi|162245369|gb|FC421271.1|FC421271
genomic: TGGGCCCAAATAATCAATATCTCTCTAAAATCATCTCTGTTTTTGCTGAGgtaattgact ... atgcatgcagGTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATG
EST: TGGGCCCAAATAATCAATATCTCTCTAAAATCATCTCTGTTTTTGCTGAG GTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATGEST: gi|37838965|gb|BJ596973.1|BJ596973
genomic: TGGGCCCAAATAATCAATATCTCTCTAAAATCATCTCTGTTTTTGCTGAGgtaattgact ... atgcatgcagGTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATG
EST: TGGGCCCAAATAATCAATATCTCTCTAAAATCATCTCTGTTTTTGCTGAG GTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATG
genomic: TGGGCCCAAATAATCAATATCTCTCTAAAATCATCTCTGTTTTTGCTGAGgtaattgact ... atgcatgcagGTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATG
aacttgcgtgtgttggatgaatgcctactgattcatttgcaatgaatgcatgcagGTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATGGTTCGATTGTTGAAGCAACTGCAGCAGACTCTGCATCCTGATGCTCTTG
attcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgacttcattcgattcgttgctttgtttcgtcagttaccgatctgttgacgatgcttcctgcaatcctcaaaattggctcgggcgccatgttctaacttgcgtgtgttggatgaatgcctactgattcatttgcaatgaatgcatgcagGTCTTGAGTGCTGGAACCGAGCTTGCTGCCGAGCAAACGGCTGCGCGCATGGTTCGATTGTTGAAGCAACTGCAGCAGACTCTGCATCCTGATGCTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG