1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtttgcccaccattcgacattataatcttctcgttctttttccaactctgaatcatcagttcggtccctaacttcattgattttggttggttaatcgtgaccgtttgtcggtcatcttcagGTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAGTTTAAGCAGGTCATTGCAGCAAGCGTTACTCGCAAAAGAGAGAGAGCTG
species | Physcomitrella patens |
transcript | PP1S207_33V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAACGGAAATCTGTTCCAGTATGTTGGATGCCCTAAACGAGTGTATTCAG GTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAGEST: gi|162161598|gb|FC339013.1|FC339013
genomic: AAACGGAAATCTGTTCCAGTATGTTGGATGCCCTAAACGAGTGTATTCAGgtttgcccac ... tcatcttcagGTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAG
EST: AAACGGAAATCTGTTCCAGTATGTTGGATGCCCTAAACGAGTGTATTCAG GTCGCAGGACCACTGCTTGATGCACATCANATCAAGTCAATGGTAGAACAGEST: gi|162245370|gb|FC421272.1|FC421272
genomic: AAACGGAAATCTGTTCCAGTATGTTGGATGCCCTAAACGAGTGTATTCAGgtttgcccac ... tcatcttcagGTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAG
EST: AAACGGAAATCTGTTCCAGTATGTTGGATGCCCTAAACGAGTGTATTCAG GTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAGEST: gi|162236780|gb|FC413459.1|FC413459
genomic: AAACGGAAATCTGTTCCAGTATGTTGGATGCCCTAAACGAGTGTATTCAGgtttgcccac ... tcatcttcagGTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAG
EST: AAACGGAAATCTGTTCCAGTATGTTGGATGCCCTAAACGAGTGTATTCAG GTCGCAGGACCACTGCTTGATGCACATCANATCAAGTCAATGGTAGAACAGEST: gi|162206479|gb|FC382848.1|FC382848
genomic: AAACGGAAATCTGTTCCAGTATGTTGGATGCCCTAAACGAGTGTATTCAGgtttgcccac ... tcatcttcagGTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAG
EST: AAACGGAAATCTGTTCCAGTATGTTGGATGCCCTAAACGAGTGTATTCAG GTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAG
genomic: AAACGGAAATCTGTTCCAGTATGTTGGATGCCCTAAACGAGTGTATTCAGgtttgcccac ... tcatcttcagGTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAG
cctaacttcattgattttggttggttaatcgtgaccgtttgtcggtcatcttcagGTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAGTTTAAGCAGGTCATTGCAGCAAGCGTTACTCGCAAAAGAGAGAGAGCTG
tcatcttc CT-rich tract
attgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcccaccattcgacattataatcttctcgttctttttccaactctgaatcatcagttcggtccctaacttcattgattttggttggttaatcgtgaccgtttgtcggtcatcttcagGTCGCAGGACCACTGCTTGATGCACATCAAATCAAGTCAATGGTAGAACAGTTTAAGCAGGTCATTGCAGCAAGCGTTACTCGCAAAAGAGAGAGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT