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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtctaatcactatctcttctttcactgccggaaattgttcatcctgaaatttaaaaactgttccaagatgttaattaaatttgggtactaactattttattccttgcagGTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCATCTCTGTTTTTGCTGAG

Basic information

species Physcomitrella patens
transcript PP1S207_33V6.1
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161597|gb|FC339012.1|FC339012
EST:     CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG                         GTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
genomic: CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAGgtgtgtctaa ... ttccttgcagGTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
EST: gi|162170619|gb|FC347115.1|FC347115
EST:     CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG                         GTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
genomic: CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAGgtgtgtctaa ... ttccttgcagGTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
EST: gi|162245369|gb|FC421271.1|FC421271
EST:     CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG                         GTCCGATCCATTTTTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
genomic: CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAGgtgtgtctaa ... ttccttgcagGTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
EST: gi|37838965|gb|BJ596973.1|BJ596973
EST:     CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG                         GTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
genomic: CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAGgtgtgtctaa ... ttccttgcagGTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactgttccaagatgttaattaaatttgggtactaactattttattccttgcagGTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCATCTCTGTTTTTGCTGAG
                               tactaac  putative branch site (score: 0)
                                     ctattttattcctt  CT-rich tract
          aagatgttaattaaat  TA-rich tract