1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtctgttgtatcagcgtattgtctactttttattcattctttcatagttagttcatcgccgttaacattttaacatctgttatcttttggtattctgcagGTGGGAGAGTGTCTTGGATCTTTAATAAAGATCTTCAAAACGTCGTTCTTGATGTACTTTGAGGAGCTGATTCCTTACATTACACCCATGCTG
species | Physcomitrella patens |
transcript | PP1S207_33V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGAACTCCTTGAAGAAGAAAACGAAACA-GAAGAGGAAGTCTTCGAGCAG GTGGGAGAGTGTCTTGGATCEST: gi|162245370|gb|FC421272.1|FC421272
genomic: GGAACTCCTTGAAGAAGAAAACGAA-CAAGAAGAGGAAGTCTTCGAGCAGgtctgttgta ... tattctgcagGTGGGAGAGTGTCTTGGATC
EST: GGGAACTCCTTGAAGAAGAAAACGAACAAGAAGAGGAAGTCTTCGAGCAG GTGGGAGAGTGTCTTGGATCTTTAATAAAGATCTTCAAAACGTCGTTCTTGEST: gi|162206479|gb|FC382848.1|FC382848
genomic: GGGAACTCCTTGAAGAAGAAAACGAACAAGAAGAGGAAGTCTTCGAGCAGgtctgttgta ... tattctgcagGTGGGAGAGTGTCTTGGATCTTTAATAAAGATCTTCAAAACGTCGTTCTTG
EST: GGGAACTCCTTGAAGAAGAAAACGAACAAGAAGAGGAAGTCTTCGAGCAG GTGGGAGAGTGTCTTGGATCTTTAATAAAGATCTTCAAAACGTCGTTCTTG
genomic: GGGAACTCCTTGAAGAAGAAAACGAACAAGAAGAGGAAGTCTTCGAGCAGgtctgttgta ... tattctgcagGTGGGAGAGTGTCTTGGATCTTTAATAAAGATCTTCAAAACGTCGTTCTTG
agttagttcatcgccgttaacattttaacatctgttatcttttggtattctgcagGTGGGAGAGTGTCTTGGATCTTTAATAAAGATCTTCAAAACGTCGTTCTTGATGTACTTTGAGGAGCTGATTCCTTACATTACACCCATGCTG
ttttaac putative branch site (score: 2)
ttaacattttaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttgtatcagcgtattgtctactttttattcattctttcatagttagttcatcgccgttaacattttaacatctgttatcttttggtattctgcagGTGGGAGAGTGTCTTGGATCTTTAATAAAGATCTTCAAAACGTCGTTCTTGATGTACTTTGAGGAGCTGATTCCTTACATTACACCCATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG